View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16552_high_8 (Length: 337)
Name: NF16552_high_8
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16552_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 3 - 322
Target Start/End: Original strand, 38630756 - 38631075
Alignment:
| Q |
3 |
atcaatctatcatgcaaatatttgttgaatttcattcatattattatgtaaattactaagaatatgtgatatatatagaagaagtgcacataccatgttt |
102 |
Q |
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| T |
38630756 |
atcaatctatcatacaaatatttgttgaatttcattcatattattatgtaaattactaagaatatgtgatatatatagaagaagtgcacataccatgttt |
38630855 |
T |
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| Q |
103 |
agcttaaaacgagaaatggataaaaatgggacaataacgcaccaaaagacaatatctgttaatatgacagcccctgcactggtctgccaaatgcagaata |
202 |
Q |
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| T |
38630856 |
agcttaaaacgagaaatggataaaaatgggacaataacgcaccaaaagacaatatctgttaatatgatagaccctgcactggtctgccaaatgcagaata |
38630955 |
T |
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| Q |
203 |
tcagtttcaactggattagaatattggtgacaaattagaaaacaaatattcatcataattaatgttctggaagaaacttaacctgatatgtaatttgcat |
302 |
Q |
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| T |
38630956 |
tcagtttcaactggattagaatattggtgacaaattagaaaacaaatattcatcataattaatgttcttgaagaaacttaacctgaaatgtaatttgcat |
38631055 |
T |
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| Q |
303 |
gaggtaaccccagaatcctg |
322 |
Q |
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| T |
38631056 |
gaggtaaccccagaatcctg |
38631075 |
T |
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