View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16552_low_1 (Length: 823)
Name: NF16552_low_1
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16552_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 769; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 13 - 805
Target Start/End: Complemental strand, 7095929 - 7095137
Alignment:
| Q |
13 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7095929 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagagggctga |
7095830 |
T |
|
| Q |
113 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095829 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagat |
7095730 |
T |
|
| Q |
213 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095729 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
7095630 |
T |
|
| Q |
313 |
gtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtactt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095629 |
gtgcaagaactaaattgggtgatgattttctgaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtactt |
7095530 |
T |
|
| Q |
413 |
caagttctttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaatt |
512 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095529 |
caagttctttcgtcagactgtggattaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaatt |
7095430 |
T |
|
| Q |
513 |
caacaattccatcctttggtagaaaagtgtagagaaatagaagcgatgaagaataagagacttgctcgagggaataacaataactgtgggggaccaactc |
612 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095429 |
caacaattccatcctttggtagaaaaatgtagagaaatagaagcgatgaagaataagagacttgctcgagggaataacaataactgtgggggaccaactc |
7095330 |
T |
|
| Q |
613 |
gttccagcaatcaaaatcgtggacgaggaggaaatgggaagaagccctacgaggactctagagaacctaaaggggattataataattcattggaacctag |
712 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095329 |
gttccagcaatcaaaatcgtggacgaggaggaaatgggaagaagccctacgaggactctagagaacctaaaggggattataataattcattggaacctag |
7095230 |
T |
|
| Q |
713 |
tgcgggagacagaggagacctctttaagccaaagccttattgtttcaagtgtggagatccaggacactatgctgacaaatgtaccgcaaagag |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7095229 |
tgcgggagacagaggagacctctttaagccaaagccttattgtttcaagtgtggagatccaggacactatgctgacaaatgtatcgcaaagag |
7095137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 765; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 13 - 805
Target Start/End: Original strand, 8375873 - 8376664
Alignment:
| Q |
13 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8375873 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
8375972 |
T |
|
| Q |
113 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8375973 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacacatttgttgcttggtgatgcagag |
8376072 |
T |
|
| Q |
213 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8376073 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
8376172 |
T |
|
| Q |
313 |
gtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtactt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
8376173 |
gtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacactgtccaggtactt |
8376272 |
T |
|
| Q |
413 |
caagttctttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaatt |
512 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8376273 |
caagttc-ttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaatt |
8376371 |
T |
|
| Q |
513 |
caacaattccatcctttggtagaaaagtgtagagaaatagaagcgatgaagaataagagacttgctcgagggaataacaataactgtgggggaccaactc |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8376372 |
caacaattccatcctttggtagaaaagtgtagagaaatagaagcgatgaagaataagagacttgctcgagggaataacaataactgtgggggaccaactc |
8376471 |
T |
|
| Q |
613 |
gttccagcaatcaaaatcgtggacgaggaggaaatgggaagaagccctacgaggactctagagaacctaaaggggattataataattcattggaacctag |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376472 |
gttccagcaatcaaaatcgtggacgaggaggaaatgggaagaagccctacgaggactctagagaacctaaaggggattataataattcattggaacctag |
8376571 |
T |
|
| Q |
713 |
tgcgggagacagaggagacctctttaagccaaagccttattgtttcaagtgtggagatccaggacactatgctgacaaatgtaccgcaaagag |
805 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8376572 |
tgctggagacagaggagacctctttaagccaaaggcttattgtttcaagtgtggagatccaggacactatgctgacaaatgttccgcaaagag |
8376664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 572
Target Start/End: Original strand, 15420472 - 15421029
Alignment:
| Q |
15 |
cagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctgatt |
114 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || ||| | ||||||||||||||||||| |
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|
| T |
15420472 |
cagagagaagatagggcagcagattcaaggggcttggctgattttcgtcgtcacaatccaccccaattccacggggaagtggacccagagaaggctgatt |
15420571 |
T |
|
| Q |
115 |
tgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagagta |
214 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
15420572 |
tgtggctacaagaagttgaaaagattttgaatgtgattaactgtcctgaagattctaaggtgaaatatgccacttatctgttgcttggtgatgcagagta |
15420671 |
T |
|
| Q |
215 |
ttggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcagagt |
314 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
15420672 |
ttggtggaaaaatgccaaaagtatgttagagaatgctcaagaggaaatcacttgggaggtttttcaagccaagttcttggaaagatttttccctcagagt |
15420771 |
T |
|
| Q |
315 |
gcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtacttca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
15420772 |
gcaagaactaaattgggtgatgattttctgaagttacgacagggcaacatgacggtaggagcatatgcagcaaggtttgagacgctatctaggtacttca |
15420871 |
T |
|
| Q |
415 |
agttctttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaattca |
514 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
15420872 |
agttcttccgtcagaccgtggatgaagcctacatgtgccatcgattccaagaggggcttaaggatgaaattcaagacatggtgatgcctttgggaattca |
15420971 |
T |
|
| Q |
515 |
acaattccatcctttggtagaaaagtgtagagaaatagaagcgatgaagaataagaga |
572 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
15420972 |
acaattccagcctttggttgaaaagtgcagagaaatagaggcgatgaagaataagaga |
15421029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 801
Target Start/End: Original strand, 15421196 - 15421255
Alignment:
| Q |
742 |
caaagccttattgtttcaagtgtggagatccaggacactatgctgacaaatgtaccgcaa |
801 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| |||||| |||| |||||||||| |
|
|
| T |
15421196 |
caaagccctattgtttccgttgtggagatccaggacattatgctaacaattgtaccgcaa |
15421255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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