View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16552_low_2 (Length: 464)

Name: NF16552_low_2
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16552_low_2
NF16552_low_2
[»] chr7 (8 HSPs)
chr7 (131-446)||(6844163-6844478)
chr7 (237-449)||(6848709-6848921)
chr7 (230-444)||(6889257-6889471)
chr7 (165-295)||(30598112-30598242)
chr7 (97-197)||(6889148-6889248)
chr7 (97-190)||(32413626-32413719)
chr7 (131-176)||(9235844-9235889)
chr7 (97-183)||(44501441-44501527)
[»] chr3 (18 HSPs)
chr3 (13-174)||(1186146-1186310)
chr3 (51-174)||(1204251-1204374)
chr3 (51-174)||(1304716-1304839)
chr3 (90-212)||(778168-778290)
chr3 (90-174)||(480946-481030)
chr3 (90-262)||(476034-476206)
chr3 (97-266)||(7118766-7118935)
chr3 (132-212)||(7125963-7126043)
chr3 (97-200)||(5361011-5361114)
chr3 (122-183)||(21537064-21537125)
chr3 (110-195)||(25596917-25597002)
chr3 (97-150)||(45870515-45870568)
chr3 (97-197)||(7058794-7058894)
chr3 (97-197)||(7177952-7178052)
chr3 (131-195)||(25601743-25601807)
chr3 (97-151)||(2996508-2996562)
chr3 (131-197)||(13490911-13490977)
chr3 (104-152)||(20977366-20977414)
[»] scaffold0438 (1 HSPs)
scaffold0438 (60-174)||(5282-5396)
[»] chr8 (2 HSPs)
chr8 (97-261)||(27701818-27701982)
chr8 (131-195)||(35335885-35335949)
[»] chr2 (4 HSPs)
chr2 (97-174)||(43864058-43864135)
chr2 (97-174)||(43867549-43867626)
chr2 (97-174)||(43875225-43875302)
chr2 (90-174)||(38989109-38989193)
[»] chr5 (6 HSPs)
chr5 (111-174)||(33958083-33958146)
chr5 (86-191)||(28091058-28091163)
chr5 (128-197)||(25215974-25216043)
chr5 (128-197)||(25280126-25280195)
chr5 (97-176)||(7894993-7895071)
chr5 (97-181)||(25064253-25064337)
[»] chr6 (7 HSPs)
chr6 (97-191)||(7115528-7115622)
chr6 (97-191)||(7120600-7120694)
chr6 (97-191)||(7124004-7124098)
chr6 (97-193)||(7140716-7140812)
chr6 (97-241)||(7175366-7175510)
chr6 (97-193)||(8656631-8656727)
chr6 (97-193)||(8680330-8680426)
[»] chr4 (1 HSPs)
chr4 (102-173)||(52186834-52186905)
[»] chr1 (2 HSPs)
chr1 (97-288)||(28928345-28928536)
chr1 (110-174)||(14288895-14288959)
[»] scaffold0896 (2 HSPs)
scaffold0896 (110-193)||(1472-1555)
scaffold0896 (110-191)||(2255-2336)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 131 - 446
Target Start/End: Original strand, 6844163 - 6844478
Alignment:
Q  131 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaattcatcacactttatgagtatcaaaagtttca 230  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||||||| ||  | |||||||||| |||||| | ||||||||    
T  6844163 gttcaaacttgcattctatccaaaagatggaacaatctttggaaacatcttcccactcttatattgaagacttcacactttacgagtatgacaagtttca 6844262  T
Q  231 ataaatttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcacgctctcgattttgagcatcatggtattgtggagccttgtctactgca 330  Q
    ||||||||||||||||||||||||||||||||||||||  || | |||||| |  |||| |||||||||   |||||| |||| |||   || |||| ||    
T  6844263 ataaatttgtgtctcgtattttgtctcttcgtaatgcaaaaagctcactgcgcattctccattttgagcgcgatggtactgtgcagcaccgtttactcca 6844362  T
Q  331 acggatcatcaaatatgctgtttcacatcatgtccaagaattaagtatcggtatcatatgtgatattcaagattttccaacttgcttcttttcatgccgc 430  Q
    ||||||  |||||||||||||||||||  |||||||  |||||||||||  |  ||||| |||||||||| ||||||||||||||||||||||||| |||    
T  6844363 acggatggtcaaatatgctgtttcacacaatgtccagcaattaagtatcaatcccatatctgatattcaacattttccaacttgcttcttttcatgtcgc 6844462  T
Q  431 actttaacttctctta 446  Q
    |||||||||| |||||    
T  6844463 actttaacttatctta 6844478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 237 - 449
Target Start/End: Original strand, 6848709 - 6848921
Alignment:
Q  237 ttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcacgctctcgattttgagcatcatggtattgtggagccttgtctactgcaacggat 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||   |||||||||||||| | ||||||||||||| |||    
T  6848709 ttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcgctatctcgattttgagcgcgatggtattgtggagacctgtctactgcaacagat 6848808  T
Q  337 catcaaatatgctgtttcacatcatgtccaagaattaagtatcggtatcatatgtgatattcaagattttccaacttgcttcttttcatgccgcacttta 436  Q
    | ||||||||||| |||||||||||||| |||| ||||| ||| ||||||  |||||||||||||||||| |||||||||||||||| || | |||||||    
T  6848809 cttcaaatatgctttttcacatcatgtcgaagagttaaggatcagtatcagctgtgatattcaagatttttcaacttgcttcttttcctgtcacacttta 6848908  T
Q  437 acttctcttacac 449  Q
    |||||||||||||    
T  6848909 acttctcttacac 6848921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 230 - 444
Target Start/End: Original strand, 6889257 - 6889471
Alignment:
Q  230 aataaatttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcacgctctcgattttgagcatcatggtattgtggagccttgtctactgc 329  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||  ||||||| | || | ||  ||||||| |    
T  6889257 aataaatttgtgtctcgcattttgtctcttcgtaatgcgtcaaccccactgcgcgctctccattttcagcgccatggtactatgtatccccgtctactcc 6889356  T
Q  330 aacggatcatcaaatatgctgtttcacatcatgtccaagaattaagtatcggtatcatatgtgatattcaagattttccaacttgcttcttttcatgccg 429  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||||||||  | |||  | |||||||||| |||||||||||||||| |||||||| |     
T  6889357 aacggatgatcaaatatgctgtttcacatcacgtccaggaattaagtatcaatctcagctctgatattcaacattttccaacttgcttattttcatgtca 6889456  T
Q  430 cactttaacttctct 444  Q
    |||||||||||||||    
T  6889457 cactttaacttctct 6889471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 30598242 - 30598112
Alignment:
Q  165 atctctggaaacatcttccaacccttatattaaattcatcacactttatgagtatcaaaagtttcaataaatttgtgtctcgtattttgtctcttcgtaa 264  Q
    |||| ||||| |||||||| ||||||||||||  ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |    
T  30598242 atctttggaagcatcttcccacccttatattatgttcttcacactttatgaggatcaaaagtttcaatagatttgtgtctcgtattttgtgtcttcgtga 30598143  T
Q  265 tgcatcaaccccactgcacgctctcgatttt 295  Q
    ||  |||||||| ||||||||| | ||||||    
T  30598142 tgtgtcaaccccgctgcacgctgttgatttt 30598112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 6889148 - 6889248
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatta 196  Q
    |||||||||||| |||||| |  ||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  6889148 tcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaaatatcttcctacccttatatta 6889247  T
Q  197 a 197  Q
    |    
T  6889248 a 6889248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 32413626 - 32413719
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctt 190  Q
    |||||||||||||| ||||||  ||||| | || ||||||||||||||||| |||| ||||||||| ||||||||||| | ||||||| |||||    
T  32413626 tcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttccatccctt 32413719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 9235889 - 9235844
Alignment:
Q  131 gttcaaacttgcattttatccaaaagatggaacaatctctggaaac 176  Q
    ||||||||||||||| | |||||||||||||||||||| |||||||    
T  9235889 gttcaaacttgcattctctccaaaagatggaacaatctttggaaac 9235844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 44501527 - 44501441
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttcc 183  Q
    ||||||||| || ||||||||||||||| | || ||||| ||||||||||| |||   ||||||||  |||| ||||||| ||||||    
T  44501527 tcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 44501441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 1186146 - 1186310
Alignment:
Q  13 aaggcaaagtaaga---agcagcagcgtagggacgacatcgaaattgaagaagacaggatcagtgaattgagcgaccatcttctccatcacatactctcc 109  Q
    ||||||||||||||   |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  1186146 aaggcaaagtaagaggcagcagcagcgtagggaagacattgaaattgaagaagacaggatgagtgaattgagcgacaatcttctccatcacatactctcc 1186245  T
Q  110 tttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  1186246 tttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaa 1186310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 1204251 - 1204374
Alignment:
Q  51 aaattgaagaagacaggatcagtgaattgagcgaccatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 150  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1204251 aaattgaagaagacaggatgagtgaattgagcgacaatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 1204350  T
Q  151 caaaagatggaacaatctctggaa 174  Q
     |||||||||| ||||||||||||    
T  1204351 gaaaagatggatcaatctctggaa 1204374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 1304839 - 1304716
Alignment:
Q  51 aaattgaagaagacaggatcagtgaattgagcgaccatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 150  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304839 aaattgaagaagacaggatgagtgaattgagcgaccatcttctcaatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 1304740  T
Q  151 caaaagatggaacaatctctggaa 174  Q
     |||||||||| ||||||||||||    
T  1304739 gaaaagatggatcaatctctggaa 1304716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 778290 - 778168
Alignment:
Q  90 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccct 189  Q
    |||||| ||||||||| || |||||||| |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||  ||| || || ||    
T  778290 ttctccttcacatactatcttttttgaaagccaaagaggcagtccaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactct 778191  T
Q  190 tatattaaattcatcacacttta 212  Q
    || ||||| ||| ||||||||||    
T  778190 tacattaagttcttcacacttta 778168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 480946 - 481030
Alignment:
Q  90 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaa 174  Q
    ||||||||| ||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  480946 ttctccatctcatactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaa 481030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 476034 - 476206
Alignment:
Q  90 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccct 189  Q
    |||||| ||||| |||||||||||| || |||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||   |||||| |||||    
T  476034 ttctccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaagatggatcaatctctggaatactcttcccaccct 476133  T
Q  190 tatattaaattcatcacactttatgagtatcaaaagtttcaataaatttgtgtctcgtattttgtctcttcgt 262  Q
    || | ||| ||| ||| |||||| ||    || ||||||| || ||||| ||||||  ||||| |||||||||    
T  476134 tacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagattttctctcttcgt 476206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 7118766 - 7118935
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatta 196  Q
    |||||||||||||| |||||| | |||| |  | ||||||||||  ||| | |||||||||||||| ||||| ||||| |||||||| ||||||| | ||    
T  7118766 tcacatactctcctctttgaaagtcaaacaaaccgttcaaacttctattctctccaaaagatggaaaaatctatggaagcatcttcccacccttacacta 7118865  T
Q  197 aattcatcacactttatgagtatcaaaagtttcaataaatttgtgtctcgtattttgtctcttcgtaatg 266  Q
    | ||| |||||||||| || | |||||  |||||  ||||| ||| ||| | ||||||||||||| ||||    
T  7118866 acttcttcacactttaagactctcaaagctttcacaaaattcgtgactcctcttttgtctcttcgcaatg 7118935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 7125963 - 7126043
Alignment:
Q  132 ttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaaattcatcacacttta 212  Q
    |||||||||| || || |||||||||||||| ||||||||||||| |||||||||||||| ||||| ||| ||||| ||||    
T  7125963 ttcaaacttgtatcttgtccaaaagatggaagaatctctggaaacgtcttccaacccttacattaatttcttcacaattta 7126043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 5361114 - 5361011
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatta 196  Q
    |||||| ||||||||||| || | |||| | ||  | |||||||||||||||||||||||||||| ||||||||||||   ||||||||| |||  ||||    
T  5361114 tcacatgctctcctttttaaacgtcaaaaaagccatccaaacttgcattttatccaaaagatggaccaatctctggaagactcttccaactcttgcatta 5361015  T
Q  197 aatt 200  Q
    ||||    
T  5361014 aatt 5361011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 21537064 - 21537125
Alignment:
Q  122 aaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttcc 183  Q
    ||||| || ||||||||||| || |||||||||||||||||  |||| ||||||||||||||    
T  21537064 aaagaagctgttcaaacttgtatcttatccaaaagatggaaggatctttggaaacatcttcc 21537125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 25596917 - 25597002
Alignment:
Q  110 tttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatt 195  Q
    ||||||||| ||||  | || ||||||||||||||||| || |  |||||||| ||||| ||||||||| |||| |||||||||||    
T  25596917 tttttgaataccaagtatgccgttcaaacttgcattttgtctacgagatggaagaatctttggaaacatattcccacccttatatt 25597002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 45870568 - 45870515
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatc 150  Q
    ||||||||| || |||| |||||||||||| ||||||||||||||| |||||||    
T  45870568 tcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatc 45870515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 7058894 - 7058794
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatta 196  Q
    |||||| |||||||||||| |  | |||||||| || |||||||| ||| | ||||||  |||||| |||||||||||| ||||||| | ||||| ||||    
T  7058894 tcacattctctcctttttggaccctaaagaggcggtccaaacttgtattctctccaaatcatggaagaatctctggaaatatcttcccatccttaaatta 7058795  T
Q  197 a 197  Q
    |    
T  7058794 a 7058794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 7177952 - 7178052
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatta 196  Q
    |||||||| ||||||||||||  ||||| | ||  ||||||||||  |||| ||   ||||||||||||||| ||||||| |||| ||||||||| ||||    
T  7177952 tcacatacactcctttttgaacaccaaatacgcttttcaaacttgtgttttgtcttgaagatggaacaatctttggaaacgtctttcaacccttagatta 7178051  T
Q  197 a 197  Q
    |    
T  7178052 a 7178052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 25601743 - 25601807
Alignment:
Q  131 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatt 195  Q
    ||||||||||||||||| |||| |||||||||  |||| ||||||| | |||| |||||||||||    
T  25601743 gttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccacccttatatt 25601807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 2996562 - 2996508
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcc 151  Q
    ||||||||| || ||||||||  | ||||| ||||||||||||||||||||||||    
T  2996562 tcacatactttcatttttgaacacaaaagatgcagttcaaacttgcattttatcc 2996508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 13490977 - 13490911
Alignment:
Q  131 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaa 197  Q
    ||||||||||  |||||||||||||||||||| ||| | |||||  ||||||| ||||||| |||||    
T  13490977 gttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaa 13490911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 20977366 - 20977414
Alignment:
Q  104 ctctcctttttgaatgccaaagaggcagttcaaacttgcattttatcca 152  Q
    ||||||||||| |||||| || | || ||||||||||||||||||||||    
T  20977366 ctctcctttttaaatgcccaaaacgccgttcaaacttgcattttatcca 20977414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 5282 - 5396
Alignment:
Q  60 aagacaggatcagtgaattgagcgaccatcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatg 159  Q
    ||||||||||||||| ||||  ||||  |||||||  ||||||||| |||||||||||  | | |||||| |||||||| ||||||||||||||||||||    
T  5282 aagacaggatcagtgtattggccgactgtcttctcattcacatactgtcctttttgaacacaagagaggccgttcaaacatgcattttatccaaaagatg 5381  T
Q  160 gaacaatctctggaa 174  Q
    || ||||||||||||    
T  5382 gatcaatctctggaa 5396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 261
Target Start/End: Complemental strand, 27701982 - 27701818
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatta 196  Q
    |||||||||||||| |||  |  ||||| | || |||||||||  |||| | |||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  27701982 tcacatactctcctctttagaaaccaaacatgccgttcaaactaccattctttccacaagatggaacaatctctggaaacgtcttccaacccttagatta 27701883  T
Q  197 aattcatcacactttatgagtatcaaaagtttcaataaatttgtgtctcgtattttgtctcttcg 261  Q
    || || ||||||||||  | | |||| ||||| |  ||||| ||||||||  |||||||||||||    
T  27701882 aactcctcacactttaaaactctcaagagttttaccaaattcgtgtctcgggttttgtctcttcg 27701818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 35335885 - 35335949
Alignment:
Q  131 gttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatt 195  Q
    |||||||||||| |||| ||||||||||||||  |||| ||||||| | ||||||| ||||||||    
T  35335885 gttcaaacttgcgttttgtccaaaagatggaaacatctatggaaacgtattccaacacttatatt 35335949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 43864135 - 43864058
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaa 174  Q
    ||||||||| |||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||| |||||| |||||    
T  43864135 tcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaa 43864058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 43867626 - 43867549
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaa 174  Q
    |||| |||| ||||||||||| || |||||||| | ||||||||||||||| ||||||||||||| || |||||||||    
T  43867626 tcacgtactgtcctttttgaacgcaaaagaggccgctcaaacttgcattttgtccaaaagatggatcactctctggaa 43867549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 43875302 - 43875225
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaa 174  Q
    ||||||| | |||||||| ||||| |||||||  ||||||||||||||||| ||||||||||||| |||||| |||||    
T  43875302 tcacatagtgtcctttttaaatgcaaaagaggtcgttcaaacttgcattttgtccaaaagatggatcaatctttggaa 43875225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 38989109 - 38989193
Alignment:
Q  90 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaa 174  Q
    |||||| ||||||||| |||||| | || || | | |||| |||||||| ||| |||| ||||||||||||| || |||||||||    
T  38989109 ttctccttcacatactgtcctttctaaacgcaatacaggctgttcaaacatgcgttttgtccaaaagatggatcattctctggaa 38989193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 33958146 - 33958083
Alignment:
Q  111 ttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaa 174  Q
    |||||||  ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  33958146 ttttgaacaccagagaggccgttcaaacttgcattttatccaaaagatggatcaatctctggaa 33958083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 28091058 - 28091163
Alignment:
Q  86 catcttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaa 185  Q
    |||||| ||| ||| || ||||||||||||  ||||||| | || ||||||||||||||| | ||||||||||   ||||||||||||| | |||||| |    
T  28091058 catcttatccttcaaattctctcctttttgtttgccaaacaagccgttcaaacttgcattctctccaaaagattcgacaatctctggaagcgtcttccca 28091157  T
Q  186 ccctta 191  Q
    ||||||    
T  28091158 ccctta 28091163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 25215974 - 25216043
Alignment:
Q  128 gcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaa 197  Q
    ||||| ||||| ||||| || |||  |||||||||||||||||||||||||||| || |||||| |||||    
T  25215974 gcagtccaaacatgcatattgtccccaagatggaacaatctctggaaacatctttcatcccttaaattaa 25216043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 25280126 - 25280195
Alignment:
Q  128 gcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatattaa 197  Q
    ||||| ||||| ||||| || |||  |||||||||||||||||||||||||||| || |||||| |||||    
T  25280126 gcagtccaaacatgcatattgtccccaagatggaacaatctctggaaacatctttcatcccttaaattaa 25280195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 7894993 - 7895071
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaac 176  Q
    |||||| || |||||||||||||||||| | || |||||| |||||||||| || |  |||||||| |||||||||||||    
T  7894993 tcacattctttcctttttgaatgccaaacaagccgttcaa-cttgcattttgtctatcagatggaagaatctctggaaac 7895071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 25064253 - 25064337
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatctt 181  Q
    |||||||||||||||| |  |  ||||| | ||||| ||||| ||||| || |||  ||||||||||||||| ||||||||||||    
T  25064253 tcacatactctcctttctagacaccaaacatgcagtccaaacatgcatattgtccccaagatggaacaatctttggaaacatctt 25064337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 7115622 - 7115528
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctta 191  Q
    |||||||||||| ||||||||  ||||| | ||||||||||||||  |||| |||||||||||||| |||||||||||   |||||||| |||||    
T  7115622 tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagcctta 7115528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 7120694 - 7120600
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctta 191  Q
    |||||||||||| ||||||||  ||||| | ||||||||||||||  |||| |||||||||||||| |||||||||||   |||||||| |||||    
T  7120694 tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagcctta 7120600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 7124098 - 7124004
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctta 191  Q
    |||||||||||| ||||||||  ||||| | ||||||||||||||  |||| |||||||||||||| |||||||||||   |||||||| |||||    
T  7124098 tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagcctta 7124004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 7140812 - 7140716
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttata 193  Q
    |||||||||||| ||||||||| | ||| | |||||||||||||| ||||| |||||||||||||| ||| | |||||   |||||||| |||||||    
T  7140812 tcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagccttata 7140716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 7175510 - 7175366
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatta 196  Q
    ||||||||||||||| || ||  ||||  | |||||||||||||||||||||||||  |||||||| ||||||||||| |  ||| ||| ||||||| ||    
T  7175510 tcacatactctccttgttaaaaaccaagcacgcagttcaaacttgcattttatccactagatggaagaatctctggaagcgcctttcaaaccttatagta 7175411  T
Q  197 aattcatcacactttatgagtatcaaaagtttcaataaatttgtg 241  Q
    | ||| ||||| |||| || | | ||| ||||||  |||||||||    
T  7175410 agttcttcacaatttaagaatttaaaatgtttcatcaaatttgtg 7175366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 8656727 - 8656631
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttata 193  Q
    |||||||||||| ||||||||  ||||| | ||||||||||||||  ||||  ||||||||||||| ||||||||||| | |||| ||| |||||||    
T  8656727 tcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagcgtcttacaagccttata 8656631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 8680426 - 8680330
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttata 193  Q
    |||||||||||| ||||||||| | ||| | |||||||||||||| ||||| |||||||||||||| ||| | |||||   |||||||| |||||||    
T  8680426 tcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagccttata 8680330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 52186834 - 52186905
Alignment:
Q  102 tactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctgga 173  Q
    ||||||||||| |||| || ||| |||| |||||||| |||||||| ||||||||||||| || ||||||||    
T  52186834 tactctcctttctgaacgcaaaacaggccgttcaaacctgcattttgtccaaaagatggatcattctctgga 52186905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 28928536 - 28928345
Alignment:
Q  97 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttatatta 196  Q
    ||||||| | || ||||| || |||||||| || ||||||||||||||  | ||||   ||||||| ||||||||||| | |||||| ||||||| ||||    
T  28928536 tcacatattatcttttttaaaagccaaagaagctgttcaaacttgcatactctccactcgatggaagaatctctggaagcgtcttcccacccttacatta 28928437  T
Q  197 aattcatcacactttatgagtatcaaaagtttcaataaatttgtgtctcgtattttgtctcttcgtaatgcatcaaccccactgcacgctct 288  Q
    | | | ||||| |||| |  | ||||  ||||||  | ||| ||||||| |||||||| ||| ||| |||| |||||| || ||||||||||    
T  28928436 agtccctcacattttacgtctttcaactgtttcaccacattcgtgtctcatattttgtttctacgtgatgcctcaaccacattgcacgctct 28928345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 14288959 - 14288895
Alignment:
Q  110 tttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaa 174  Q
    ||||||||  ||||| | || ||||||||||||||  | |||||||||||||| |||||||||||    
T  14288959 tttttgaaaaccaaatacgccgttcaaacttgcatactctccaaaagatggaagaatctctggaa 14288895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 1472 - 1555
Alignment:
Q  110 tttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaacccttata 193  Q
    ||||||||  ||||| | ||||||||||||||  ||||  ||||||||||||| ||||||||||| | |||| ||| |||||||    
T  1472 tttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagcgtcttacaagccttata 1555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 2255 - 2336
Alignment:
Q  110 tttttgaatgccaaagaggcagttcaaacttgcattttatccaaaagatggaacaatctctggaaacatcttccaaccctta 191  Q
    ||||||||  ||||| | ||||||||||||||  ||||  ||||||||||||| |||||||||||   |||||||| |||||    
T  2255 tttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagtgtcttccaagcctta 2336  T

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