View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16552_low_20 (Length: 238)
Name: NF16552_low_20
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16552_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 32554382 - 32554193
Alignment:
| Q |
31 |
cacagacgataaatttgtaagtgtatatcgttgagtcctatcgnnnnnnnttgacccaagaatttatgtggcaagcttttttgtgaatcctgctaactta |
130 |
Q |
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| T |
32554382 |
cacaaacgataaatttgtaagtgtatatcgttgaatcctatcgaaaaaaattgacccaagaatttatgtggcaagcttttttgtgaatcctgctaactta |
32554283 |
T |
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| Q |
131 |
agtgaagatgaatcaagggtttatggtccaatcaaagaacttttgtctgaagaaaaccctccaatctacaaagatattacactaaaagatt |
221 |
Q |
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| T |
32554282 |
agtgaagatgaatcaagggtttatggtctaatcaaagaacttttgtctgaagaaaaccctcc-atctacaaagatattaccctaaaagatt |
32554193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 19892040 - 19892119
Alignment:
| Q |
142 |
atcaagggtttatggtccaatcaaagaacttttgtctgaagaaaaccctccaatctacaaagatattacactaaaagatt |
221 |
Q |
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| T |
19892040 |
atcaaaggtttatggtcctattaaggagctcctttcagaagaaaaccctccaatctacaaagacattaccataaaagatt |
19892119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 28647838 - 28647790
Alignment:
| Q |
158 |
ccaatcaaagaacttttgtctgaagaaaaccctccaatctacaaagata |
206 |
Q |
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| T |
28647838 |
ccaatcaaggaacttttatctaaagaaaaccctccaatatacaaagata |
28647790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 28690054 - 28690002
Alignment:
| Q |
137 |
gatgaatcaagggtttatggtccaatcaaagaacttttgtctgaagaaaaccc |
189 |
Q |
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| T |
28690054 |
gatgaatcaatagtttatggtccaatcaaggaactattatctgaagaaaaccc |
28690002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 28639096 - 28639050
Alignment:
| Q |
158 |
ccaatcaaagaacttttgtctgaagaaaaccctccaatctacaaaga |
204 |
Q |
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| T |
28639096 |
ccaatcaaggaacttttatctgaagaaaacccaccaatatacaaaga |
28639050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 28130720 - 28130781
Alignment:
| Q |
149 |
gtttatggtccaatcaaagaacttttgtctgaagaaaaccctccaatctacaaagatattac |
210 |
Q |
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| T |
28130720 |
gtttatggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattac |
28130781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 41242339 - 41242400
Alignment:
| Q |
149 |
gtttatggtccaatcaaagaacttttgtctgaagaaaaccctccaatctacaaagatattac |
210 |
Q |
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| T |
41242339 |
gtttatggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattac |
41242400 |
T |
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