View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16552_low_22 (Length: 222)
Name: NF16552_low_22
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16552_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11200504 - 11200284
Alignment:
| Q |
1 |
ccttaacataatcaacaagtaatatactaaaattctcaatccaaccaaataagnnnnnnnntatttgtaagtcagccaagattaacgaagatgctaannn |
100 |
Q |
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| T |
11200504 |
ccttaacataatcaacaagtaatatactaaaattctgaatccaaccaaataagaaaaaaa-tatttttaagtcagccaagattaacgaagatgctaattt |
11200406 |
T |
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| Q |
101 |
nnnnggagttaattaagatgctaaattgtaaatgatttaattccaaaattatattttgattcattattttctattttgcataaataattgcaacacaaac |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11200405 |
ttttggagttaattaagatgctaaattgtacatgatttaattccaaaattatattttgattcattaatttctattttgcataaataattgcaacacaaac |
11200306 |
T |
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| Q |
201 |
acatacattataccagagagta |
222 |
Q |
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||||||||||||| |||||||| |
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| T |
11200305 |
acatacattatactagagagta |
11200284 |
T |
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