View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16552_low_4 (Length: 423)
Name: NF16552_low_4
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16552_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 47620200 - 47620617
Alignment:
| Q |
1 |
ttcattttttgtaactacctgcagcataatacacgcacctgcgttaattaatttagatagagtgagttgtataataagcattgttttgaagtaaatttaa |
100 |
Q |
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| T |
47620200 |
ttcattttttgtaactacctgcagcataatacacgcacctgcgttaattaatttagatagagtgagttgtataataagcattgttttgaagtaaatttaa |
47620299 |
T |
|
| Q |
101 |
attctacaatctattcttctattctatgttgtggctacctaaattcggaaggtgatgctacatttggggtcataaaatcttgttcaaattgtagagtatg |
200 |
Q |
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| T |
47620300 |
attctacaatctattcttctattctatgttgtggctacctaaattcggaaggtgatgctacatttggggttataaaatcttgttcaaattgtagagtatg |
47620399 |
T |
|
| Q |
201 |
ctttggatgaaccgtattttctaagataaacagtgcccaaaaatatttatatccttcatgtgtcgttggcgcatatatttgtctcaaactttatatcatt |
300 |
Q |
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| T |
47620400 |
ctttggatgaaccgtattttctaagataaacagtgcctaaaaatatctatatccttcatgtgtcgttggcacatatatttgtctcaaactttatatcatt |
47620499 |
T |
|
| Q |
301 |
tcagttttgctgctctgtaacacaacaacataatttcatttcatcacaatgcctcactctcattcaccaatagggctggtaattaaggcttaaggactag |
400 |
Q |
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|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47620500 |
tcggttttactgctctgtaacacaacaacataatttcatttcatcacaatgcctcactctcattcaccaatagggctggtaattaagccttaaggactag |
47620599 |
T |
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| Q |
401 |
gtttagaagtataattta |
418 |
Q |
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| T |
47620600 |
gtttagaagtataattta |
47620617 |
T |
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