View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16552_low_7 (Length: 393)
Name: NF16552_low_7
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16552_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 8905018 - 8904636
Alignment:
| Q |
11 |
cacagagcataacaaatctaattaacatatactgtgaaaagaaatttaaaaagagcagcttaagacctgtgccataacagtggttggaatctgaataaaa |
110 |
Q |
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| T |
8905018 |
cacagagcataacaaatctaattaacatatactgtgaaaagaaatttaaaaagagcagcttaagacctgtgccataacagtggttggaatctgaataaaa |
8904919 |
T |
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| Q |
111 |
ttaacaccacgtaggaatgaagcggcagcaaagccacacatgtcgccaatcacaccacctccaagggcaacaaaagtacaccgccggtccaatcgagact |
210 |
Q |
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| T |
8904918 |
ttaacaccacgtaggaatgaagcggcagcaaagccacacatgtcgccaatcacaccacctccaagggcaacaaaagtacaccgccggtccaatcgagact |
8904819 |
T |
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| Q |
211 |
caatggccttgtcaaacacttccataagagtattctgtcatttgaccacgcaatcaatttttacaacattaccaagagtgtcaataaacacaaaaccaat |
310 |
Q |
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| T |
8904818 |
caatggccttgtcaaacactttcataagagtatcctgtcagttgaccacacaatcaatttttacaacattaccaagagtgtcaataaacacaaaaccaat |
8904719 |
T |
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| Q |
311 |
tcaaacacaaaataaagacctaccatgtccttgtactgctcaccgtccggtaaaattacactctcaacagaaacatttgggtt |
393 |
Q |
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| T |
8904718 |
tcaaacacaaaataaagacctaccatgtccttgtactgctcaccgtccggtaaaattacactctcaacagaaacatttgggtt |
8904636 |
T |
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