View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16552_low_8 (Length: 367)
Name: NF16552_low_8
Description: NF16552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16552_low_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 2369359 - 2368985
Alignment:
| Q |
1 |
cttaaaataacattggggatacggaggcaaaatagattctgataatgggttccaaaaattggccgtgattgagaatgagaaacatgtcataagatatctt |
100 |
Q |
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| T |
2369359 |
cttaaaataacattggggatatggaggcaaaatagattatgataatgggttccagaaattggccgtgattgagaatgagaaacatgtcataagatatctt |
2369260 |
T |
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| Q |
101 |
cataacaagttttaataagagaatccaaacagacctaaataaattaaagttaagggc-ttcatatacatacaacaataattgttcattgcaaacatccaa |
199 |
Q |
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| T |
2369259 |
cataacaagttttaataagacaatccaaacagacctaaa-----taaagttaagggctttcatatacatacaacaataattgttcattgcaaacatccaa |
2369165 |
T |
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| Q |
200 |
ctgaaattcaaaactatatatgttgct-aacagcaattagcatacattattattaatctaaaaatttagcatccatgatcatgctcaaagttgcat---- |
294 |
Q |
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| T |
2369164 |
ctgaaattcaaaactatatatgttgctaaacagcaattagcatacattattattaatctaaaaatttagcatccatgatcatgctcaaagttgcatatat |
2369065 |
T |
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| Q |
295 |
-------atatatttgcccctgtatcacttccatcttttgccaaattttccatgcttaaacttgccaaaaccaaacctac |
367 |
Q |
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| T |
2369064 |
atacttaatatatttgcccctgtatcacttccatcgtttgccaaattttccatgcttaaacttgccaaaaccaaacctac |
2368985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 36697973 - 36697896
Alignment:
| Q |
1 |
cttaaaataacattggggatacggaggcaaaatagattctgataatgggttccaaaaattggccgtgattgagaatga |
78 |
Q |
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| T |
36697973 |
cttaaaataacatggaggatatggaggcaaaatagattctgataatgggttccagaaattggccgtgattgagaatga |
36697896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 2365663 - 2365550
Alignment:
| Q |
233 |
aattagcatacattattattaatctaaaaatttagcatccatgatcatgctcaaagttgcat-----atatatttgcccctgtatcacttccatcttttg |
327 |
Q |
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||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||| || ||||||| ||| ||| |||||||||||| ||| |
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| T |
2365663 |
aattagcatacat---tattcatctaataattcagcattgatgatcatgctcaaagttggatatttaatatattcgcctctgcatcacttccatcccttg |
2365567 |
T |
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| Q |
328 |
ccaaattttccatgctt |
344 |
Q |
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| T |
2365566 |
ccgaattttccatgctt |
2365550 |
T |
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