View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16553_high_3 (Length: 320)
Name: NF16553_high_3
Description: NF16553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16553_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 29675597 - 29675899
Alignment:
| Q |
1 |
gttacatattttagttttttaatatttatttatctttgatcaacggtccgattttaatatatggatcatgctaacaagtgtttaagggcgctatttaaga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29675597 |
gttacataccttagttttttaatatttatttatctttgatcaacggtccgattttaatatatggatcatgctaacaagtgtttaagggcgctgtttaaga |
29675696 |
T |
|
| Q |
101 |
aagccagaaaagaaatttgtcttagaattacaagtcaactgtcaaacaattgtcaaataataaatacatcattttctaatacaaaatttacctattgttg |
200 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29675697 |
aacccagaaaataaatttgtcttagaattacaagtcaactgtcaaacaattgtcaaataataaatacatcattttctaatacaaaatttacctattgttg |
29675796 |
T |
|
| Q |
201 |
aattacattacttgatgcagccaaccatatgctacttctgttaactgctaatcatatttagacattgtaatctcaaattattcatgatcctttacctact |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29675797 |
aattacattacttgatgcagccaaccatatgctacttctgttaactgctaatcatttttagacattgtaatctcaaattattcatgatcctttacctact |
29675896 |
T |
|
| Q |
301 |
ctt |
303 |
Q |
| |
|
||| |
|
|
| T |
29675897 |
ctt |
29675899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University