View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16553_low_3 (Length: 657)
Name: NF16553_low_3
Description: NF16553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16553_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 371
Target Start/End: Complemental strand, 39287500 - 39287149
Alignment:
| Q |
20 |
gcaagtgtaaaagagattgagaggtgtattagggaggttatggaagggcctaatgctggtgagattaagaaaagggctatggaaattaaagagtctgcaa |
119 |
Q |
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| T |
39287500 |
gcaagtgtaaaagagattgagaggtgtattagggaggttatggaagggcctaatgctggtgagattaagaaaagggctatggaaattaaagattctgcaa |
39287401 |
T |
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| Q |
120 |
gaaaagctttggaggaagatggtagttctagtaataatttcaatcaatttataagtgaattgattgttaaaaacaattcaagggaacagcagaaagcttt |
219 |
Q |
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| T |
39287400 |
gaaaagctttggaggaagatggtagttctagtaataatttcaatcaatttataagtgaattgattgttaaaaacaattcaagggaacagcagaaagcttt |
39287301 |
T |
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| Q |
220 |
agatacagaagtaaatgttgagcttcagttttagatagcttttggttcttgtgccccaatgattttatatttatcttttcgattaataatgctagcgtgc |
319 |
Q |
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| T |
39287300 |
agatacagaagtaaatgttgagcttcagttttagatagcttttggttcttgtgccccaatgattttatatttatcttttcgattaataatgctagcgtgc |
39287201 |
T |
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| Q |
320 |
atatgtgctattctgtccaatttactaatgcacttcaataaaaattggttct |
371 |
Q |
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| T |
39287200 |
atatgtgctattctgtccaatttactaatgcacttcaataaaaattggttct |
39287149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 376 - 645
Target Start/End: Complemental strand, 39286707 - 39286434
Alignment:
| Q |
376 |
ttattttgatagagcgatgttctgagcttggaaaactcaatttcaatcagttgttaattacacttttggttgttcgtatactattttacgctacaagcct |
475 |
Q |
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| T |
39286707 |
ttattttgatagagcgatgttctgagcttggaaaactcaatttcaatcagttgttaattacacttttggttgttcgtatactactttacgctacaagccc |
39286608 |
T |
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| Q |
476 |
gctagg----tacagttttgcggtatttcaaaaaggggtgaatacctaattgaaaacaattgtatcagcaaagttatttttctgatcggttactttggat |
571 |
Q |
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| T |
39286607 |
gctaggaaattacagttttgtggtatttcaaaaaggggtgaatacctaattgaaaacaattgtatcagcaaagttatttttctgatcggttactttggat |
39286508 |
T |
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| Q |
572 |
ttgtaaaaaaggaatcatttatgcccaaaagaacaagtgcaattagagtattactaacactgtcattgcctttg |
645 |
Q |
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| T |
39286507 |
ttgtaaaaaaggaatcatttatgcccaaaagaacaagtgcaattagagtattactaacactgtcattgcctttg |
39286434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 39491535 - 39491718
Alignment:
| Q |
20 |
gcaagtgtaaaagagattgagaggtgtattagggaggttatggaagggcctaatgctggtgagattaagaaaagggctatggaaattaaagagtctgcaa |
119 |
Q |
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| T |
39491535 |
gcaagtgtagaagagattgagaggtgtattagggaggttttggaagggccacatgctggtgagattaagaagagggctacagaaattaaagagttggcaa |
39491634 |
T |
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| Q |
120 |
gaaaagctttggaggaagatggtagttctagtaataatttcaatcaatttataagtgaattgattgttaaaaacaattcaaggg |
203 |
Q |
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| T |
39491635 |
gaaaaactttacaggaaggtggtagttctagcaagaacttcaataagtttatcagtgaattggttgttaagaacgatccaaggg |
39491718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 482 - 631
Target Start/End: Original strand, 35516466 - 35516616
Alignment:
| Q |
482 |
tacagttttgcggtatttcaaaaaggggtgaatacctaattgaaaacaattgtatcagcaaagttatttttctgatcggttactttggatttgtaaaaaa |
581 |
Q |
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| T |
35516466 |
tacaattttgcagtatttcaagaaggggtgagtacctaattgaaaacaattgcatcagagaagttatttttgtgatcttctactttggattagt--aaaa |
35516563 |
T |
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| Q |
582 |
ggaatcatttatgcccaaaag---aacaagtgcaattagagtattactaacac |
631 |
Q |
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| T |
35516564 |
ggaatcagttatgcccaaaagcacaacaagtgcaattagagtattactaacac |
35516616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 6110964 - 6110866
Alignment:
| Q |
376 |
ttattttgatagagcgatgttctgagcttggaaaactcaatttcaatcagttgttaattacacttttggttgttcgtatactattttacgctacaagcc |
474 |
Q |
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||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||||| |
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| T |
6110964 |
ttattttgataaagcattgttctgaggttggaaaactcaatttcaatcaattgttaattacacttttggatgttcatatattattttacgctacaagcc |
6110866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 377 - 463
Target Start/End: Complemental strand, 3028852 - 3028766
Alignment:
| Q |
377 |
tattttgatagagcgatgttctgagcttggaaaactcaatttcaatcagttgttaattacacttttggttgttcgtatactatttta |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||| |
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| T |
3028852 |
tattttgatagagcgatgttctgagcttggaaaactcaatatcaatcggttgttaattacacttttggttgttcctatagtatttta |
3028766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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