View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16553_low_6 (Length: 281)
Name: NF16553_low_6
Description: NF16553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16553_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 298899 - 298638
Alignment:
| Q |
1 |
aaattgcagtctctagcttatcaccagaccttaattccagctaaccgtagagactcaatggcttctgtttctccctcttgcagcttgtcctctcaactct |
100 |
Q |
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| T |
298899 |
aaattgcagtctctagcttatcaccagaccttaattccagctagccgtagagactcaatggcttctgtttctccctcttgcagcttgtcctctcaactct |
298800 |
T |
|
| Q |
101 |
agttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggcctcttcatacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298799 |
agttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggcctcttcatacatg |
298700 |
T |
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| Q |
201 |
ctttgccaatccttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaa |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298699 |
ctttgccaatccttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaa |
298638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 301034 - 300847
Alignment:
| Q |
73 |
ccctcttgcagcttgtcctctcaactctagttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaat |
172 |
Q |
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| T |
301034 |
ccctcttgcatcttgtcctc--aactccagttgccccaagtaggtttagtttgaattctacaagcgcttccttttgaggtagttttgcagtttggttaat |
300937 |
T |
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| Q |
173 |
caatgaagttccggcctcttcatacatgctttgccaatccttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaa |
262 |
Q |
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| T |
300936 |
caatgaagtgcttccctcttcataaatgctttgccaatccttaaattctgcatccgaaagttcccttgaggcaattacaagagtccttaa |
300847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 27465478 - 27465609
Alignment:
| Q |
24 |
ccagaccttaattccagctaaccgtagagactcaatggcttctgtttctccctcttgcagcttgtcctctcaactctagttgctccaagtaggtttggtt |
123 |
Q |
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||||||||| ||||||||| |||||| |||||||||||||||| | | ||||||||||||||||| ||||| || ||||||||||||||| ||| | |
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| T |
27465478 |
ccagaccttgattccagcttgccgtagggactcaatggcttctggtacaccctcttgcagcttgtc--ctcaattccagttgctccaagtagatttaaat |
27465575 |
T |
|
| Q |
124 |
tgcattctacatgtgctgttctttgacgtagttt |
157 |
Q |
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||||||||| | | |||| | ||||||||||||| |
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| T |
27465576 |
tgcattctataagagctgctgtttgacgtagttt |
27465609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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