View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16553_low_7 (Length: 262)
Name: NF16553_low_7
Description: NF16553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16553_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 39948994 - 39948741
Alignment:
| Q |
1 |
tgtgacaatatttgtagccctttgagctccttctttagctaacatatgttcgatcgtaagactaataaaatctcttgagctgtcatccagcatgtccaat |
100 |
Q |
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| T |
39948994 |
tgtgacaatatttgtagccctttgagctccttctttagctaacatatgttcgatcgtaagactaataaaatctcttgaactgtgatccagcatgtccaat |
39948895 |
T |
|
| Q |
101 |
ggtgttaaacccatgttgttcatattatttatagctgtccaatggtgttaaataatttggagattgttctttaga--gatatttaagaaaaccataaact |
198 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39948894 |
ggtgttaaacccatgttgttcaaattatttatagctgtccaatggtgttaaataatttggagattgttctttagagcgatatttaagaaaaccataaact |
39948795 |
T |
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| Q |
199 |
gtggttgaggaaacattcaagttattttagaaaaatggcaagtagtaccctttg |
252 |
Q |
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| T |
39948794 |
gtggttgaggaaacattcaagttattttagaaaaatggcaagtagtaccttttg |
39948741 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 33220378 - 33220309
Alignment:
| Q |
150 |
aaataatttggagattgttctttagagatatttaagaaaaccataaactgtggttgaggaaacattcaag |
219 |
Q |
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| T |
33220378 |
aaataatgtgaagatagttctttagagacttttgagaaaatcataaactatggttgaaaaaacattcaag |
33220309 |
T |
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