View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_high_117 (Length: 204)
Name: NF16554_high_117
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_117 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 32427675 - 32427492
Alignment:
| Q |
1 |
acctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgttgctcgtttcaacttctctcatggttcctatgaatatcatcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32427675 |
acctgcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgtcgctcgtttcaacttctctcatggttcctatgaatatcatcag |
32427576 |
T |
|
| Q |
101 |
gaaacgcttgataatcttagaaccgctatgcaaaataccggtattctctgcgccgtcatgcttgacactaaggtattaaacttt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32427575 |
gaaacgcttgataatcttagaaccgctatgcaaaataccggtattctctgcgccgtcatgcttgacactaaggtattaaacttt |
32427492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 32421834 - 32421658
Alignment:
| Q |
5 |
gcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgttgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaa |
104 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||| | | |||||| ||||| ||||| | |||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
32421834 |
gcatctaggtctgttcccatggtcgagaagcttttgcgagcaggtatgaacgttgccagattcaacttctctcatggttctcatgactatcatcaggaaa |
32421735 |
T |
|
| Q |
105 |
cgcttgataatcttagaaccgctatgcaaaataccggtattctctgcgccgtcatgcttgacactaaggtattaaac |
181 |
Q |
| |
|
| ||||||||||||||| | |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32421734 |
ctcttgataatcttagagctgctatggagaataccggaattctctgcgccgtcatgcttgatactaaggtattaaac |
32421658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 40599039 - 40598863
Alignment:
| Q |
5 |
gcatcgaggtctgttccaatggtggagaagcttctacaagcaggcatgaatgttgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaa |
104 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||| | | |||||| ||||| ||||| | |||||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
40599039 |
gcatctaggtctattcccatggtcgagaagcttttgcgagcaggtatgaacgttgccagattcaacttctctcacggttctcatgactatcatcaggaaa |
40598940 |
T |
|
| Q |
105 |
cgcttgataatcttagaaccgctatgcaaaataccggtattctctgcgccgtcatgcttgacactaaggtattaaac |
181 |
Q |
| |
|
| ||||||||||||||| |||| ||| | ||||| |||||||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
40598939 |
ctcttgataatcttagagccgccatggagaatactggtattctttgcgccgtcatgcttgatactaaggtataaaac |
40598863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 69835 - 69980
Alignment:
| Q |
29 |
gagaagcttctacaagcaggcatgaatgttgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatcttagaaccgcta |
128 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||||| ||||| |||||| | || |||||||||||||||| ||||||||||| | | |||| |
|
|
| T |
69835 |
gagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctcacatggtactcatcaatatcatcaggaaacccttgataatctcaagtctgcta |
69934 |
T |
|
| Q |
129 |
tgcaaaataccggtattctctgcgccgtcatgcttgacactaaggt |
174 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
69935 |
tgcactctactggtattctctgcgctgtcatgctcgacaccaaggt |
69980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University