View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_12 (Length: 603)
Name: NF16554_high_12
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 344 - 514
Target Start/End: Complemental strand, 42708927 - 42708758
Alignment:
| Q |
344 |
ggtgggttcatgttattgtaggactatacagtgtagtgtgggggaaaaacagagcaaacacagaaggcattgcatgcaaccctattggaataatgatgac |
443 |
Q |
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| T |
42708927 |
ggtgggttcatgttattgtaggactgtacagtgtagtgtggggaaaaaacagagcaaacacagaaggcattgcatgcaacgctattggaataatgatgac |
42708828 |
T |
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| Q |
444 |
tcttttttgtagtcgctttgtaataaacgagttacattgacttcagttacattctcttatcttgaattttt |
514 |
Q |
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| T |
42708827 |
tct-ttttgtagtcgctttgtaataaacgagttacattcacttcagatacattctcttatcttgatttttt |
42708758 |
T |
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Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 42709123 - 42709043
Alignment:
| Q |
15 |
caatcttctcctctataattctcttatcttggaaggtaattctatctactgattaattaataaatttcgaaacatctatct |
95 |
Q |
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| T |
42709123 |
caatcttctcctctataattctcttaccttggaaggtaattctatctactgattaattaataaatttcgaaacatctatct |
42709043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 498 - 573
Target Start/End: Complemental strand, 42708732 - 42708657
Alignment:
| Q |
498 |
tcttatcttgaatttttctttctcttgaattaagtatcgctttgtaataatcaaatttttctttctctttattata |
573 |
Q |
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| T |
42708732 |
tcttatcttgaatttttctttctcttgaattaagtatcactttgtaataaccaatttttcttttatctttattata |
42708657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 438 - 587
Target Start/End: Complemental strand, 22210381 - 22210244
Alignment:
| Q |
438 |
gatgactcttttttgtagtcgctttgtaataaacgagttacattgacttcagttacattctcttatcttgaatttttctttctcttgaattaagtatcgc |
537 |
Q |
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| T |
22210381 |
gatgactcttttt-gtagtcgctttgtaataaacgagttacattgacttcagttacattctcttatcttgaatttttctttctcttgaattaagtatcgc |
22210283 |
T |
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| Q |
538 |
tttgtaataatcaaatttttctttctctttattatacttacatcaataat |
587 |
Q |
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| T |
22210282 |
ttt-----------atttttctttctctttattatacttacatcaataat |
22210244 |
T |
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