View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_2 (Length: 871)
Name: NF16554_high_2
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 729; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 86 - 856
Target Start/End: Original strand, 2337004 - 2337773
Alignment:
| Q |
86 |
ttaatcatattcactataaataaacttgagcgtgtttaattcaatcaaactgtttcttatatccaaaatcaatacatgtaagacagaatgaaaacaatac |
185 |
Q |
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| T |
2337004 |
ttaatcatattcactataaatatacttgagcgtgtttaattcaatcaaactgtttcttatatccaaaatcaatacatgtaagacagaataaaaacaatac |
2337103 |
T |
|
| Q |
186 |
acctaaacagtcacacaattcaatatttttcttacaaaattatactcatcaagcggggtaaaaataca-caatattccctgtaaattccaaatataccta |
284 |
Q |
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| T |
2337104 |
acctaaacagtcacacaattcaatatttttcttacaaaattatactcatcaagcggggtaaaaatacaacaatattccctgtaaattccaaatataccta |
2337203 |
T |
|
| Q |
285 |
cagtgtatttttcaagtacaaaaaattaccccaagcagctctctaaaaggtattactaatgacaagctttttctataataaatcgactatacgattctgc |
384 |
Q |
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| T |
2337204 |
cagtgtatttttcaagtacaaaaaattaccccaaacagctctctaaaaggtattactaatgacaagctttttctataataaatcgactatacgattctgc |
2337303 |
T |
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| Q |
385 |
cacttcttgttactgcagtgtcataagctggaacagcataacatggatacaacaatttgttcaatcaatgcccaaactggaataaggttcaattccaccc |
484 |
Q |
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| T |
2337304 |
cacttcttgttactgcagtgtcataagctggaacagcataacatggatacaacaatttgttcaatcaatgcccaaactggaataaggttcaattccaccc |
2337403 |
T |
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| Q |
485 |
tgacaaagataaaacagagcaagaaattgcaagataaatctactttggattctactctatcctatacaaataaaactagcaaaaattattgctcaacgga |
584 |
Q |
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| T |
2337404 |
tgacaaagataaaacagagcaagaaattgcaagataaatctactttggattctactctatcctatacaaataaaactagcaaaaattattgctcaacgga |
2337503 |
T |
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| Q |
585 |
cagaactttttatagcaaaaacagaagaggctaacataacatttgatatatatataactcagattcaactacgagacatgccattattaataatacaatc |
684 |
Q |
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| T |
2337504 |
cagaactttttatagcaaaaacagaagaggctaacataacatttg--atatatataactcagattcaactacgagacatgccattattaataatacaatc |
2337601 |
T |
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| Q |
685 |
tagcaataaatggaagagtttaactccaagttacctgctcaactttttccaaaattgatgtatttgaatagatgcatatgtgtatgtaagcatgcaagta |
784 |
Q |
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| T |
2337602 |
tagcaataaatggaagagtttaactccaagttacatgctcaactttttccaaaattgatgtatttgaatagatgcatatgtgcatgtaagcatgcaagta |
2337701 |
T |
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| Q |
785 |
tggagagtagtctccttttttctattggtagaatgaagaaatgaccaaccaaacttattttacagaaatatg |
856 |
Q |
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| T |
2337702 |
tggagagtagtctccttttttctattggtagaatgaagaaatgaccaacgaaacttattttacagaaatatg |
2337773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 2336953 - 2337008
Alignment:
| Q |
14 |
cacagacaccccgcagctatcactctacactagatcacgtggtcttagatgtttaat |
70 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
2336953 |
cacagacaccccgcagctattactc-acactagatcacgtggtcttagatgtttaat |
2337008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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