View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_high_21 (Length: 526)

Name: NF16554_high_21
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_high_21
NF16554_high_21
[»] chr6 (6 HSPs)
chr6 (16-510)||(6248932-6249426)
chr6 (250-325)||(6234713-6234789)
chr6 (248-329)||(6255084-6255168)
chr6 (254-327)||(6260312-6260385)
chr6 (347-397)||(24556851-24556901)
chr6 (20-61)||(6260577-6260618)
[»] chr7 (3 HSPs)
chr7 (342-398)||(32420180-32420236)
chr7 (349-384)||(40727387-40727422)
chr7 (348-382)||(9270979-9271013)
[»] chr2 (6 HSPs)
chr2 (20-87)||(24470735-24470802)
chr2 (347-378)||(9716524-9716555)
chr2 (347-384)||(1845112-1845149)
chr2 (347-384)||(16202331-16202368)
chr2 (347-384)||(39848749-39848786)
chr2 (348-384)||(5880068-5880104)
[»] chr4 (5 HSPs)
chr4 (347-384)||(26659996-26660033)
chr4 (345-398)||(12154493-12154546)
chr4 (348-397)||(22748988-22749037)
chr4 (348-397)||(55957838-55957887)
chr4 (445-505)||(55957731-55957791)
[»] chr3 (7 HSPs)
chr3 (342-379)||(29563875-29563912)
chr3 (348-384)||(11837150-11837186)
chr3 (348-505)||(51880383-51880539)
chr3 (342-379)||(20601405-20601442)
chr3 (342-379)||(29697321-29697358)
chr3 (345-397)||(9503653-9503705)
chr3 (348-384)||(52426143-52426179)
[»] chr1 (6 HSPs)
chr1 (342-379)||(2758839-2758876)
chr1 (408-505)||(41158143-41158240)
chr1 (347-385)||(37696848-37696886)
chr1 (472-505)||(2758968-2759001)
chr1 (347-379)||(16010861-16010893)
chr1 (348-384)||(25412530-25412566)
[»] chr8 (3 HSPs)
chr8 (347-379)||(40691039-40691071)
chr8 (347-379)||(44652750-44652782)
chr8 (342-379)||(22738426-22738463)
[»] scaffold0040 (1 HSPs)
scaffold0040 (347-377)||(24358-24388)
[»] scaffold0036 (1 HSPs)
scaffold0036 (349-379)||(53238-53268)
[»] scaffold0330 (1 HSPs)
scaffold0330 (342-379)||(11245-11282)
[»] chr5 (2 HSPs)
chr5 (353-397)||(14830442-14830486)
chr5 (348-384)||(15529915-15529951)


Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 6249426 - 6248932
Alignment:
Q  16 atgaatagacacgttagtattttattgtctaagtcagtgtgtctaacgtttgaaattgatagagtgactcatttaatagacatgaagcaaatttagagac 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6249426 atgaatagacacgttagtattttattgtctaagtcggtgtgtctaacgtttgaaattgatagagtgactcatttaatagacatgaagcaaatttagagac 6249327  T
Q  116 aatttaactttttcnnnnnnnttcaaggaaggagttgatcgattgttacaaatnnnnnnnncaaagttctctattcacttattaccttagtagctaagat 215  Q
    ||||||||||||||       |||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  6249326 aatttaactttttcaaaaaaattcaaggaagaagttgatcgattgttacaaataaaaaaaacaaagttctctattcacttattaccttagtagctaagat 6249227  T
Q  216 ttaaatgttgaacctcattcacaccatctttggatgtcttaactcaatcacttgagctaaatcatttgtaattaaggttaagtcagatttatgtttgatc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6249226 ttaaatgttgaacctcattcacaccatctttggatgtcttaactcaatcacttgagctaaatcatttgtaattaaggttaagtcagatttatgtttgatc 6249127  T
Q  316 caagatgaaatagttgttactcgaatgggtaggaataggctaggccgagctaggctttgcaaggtctaaacttgccctgccaannnnnnnataaagccta 415  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||       ||||||||||    
T  6249126 caagatgaaatagttgttactcgtatgggtaggaataggctaggccgagctaggctttgcaaggcctaaatttgccctgccaatttttttataaagccta 6249027  T
Q  416 agcctgacatggggcctatcacaagcttgctttttagacctgaacctggtcttataaaagcccgatacgacatgctagcctgtttaaaagattat 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6249026 agcctgacatggggcctatcacaagcttgctttttagacctgaacctggtcttataaaagcccgatacgacatgctagcctgtttaaaagattat 6248932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 325
Target Start/End: Complemental strand, 6234789 - 6234713
Alignment:
Q  250 tgtcttaactcaatcacttgagctaaatcatttg-taattaaggttaagtcagatttatgtttgatccaagatgaaa 325  Q
    |||||||||||||||||||| |||| ||| |  | |||||||| |||||||||||||||||||||||| ||||||||    
T  6234789 tgtcttaactcaatcacttgtgctacatcgtggggtaattaagtttaagtcagatttatgtttgatcctagatgaaa 6234713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 6255168 - 6255084
Alignment:
Q  248 gatgtcttaactcaatcacttgagctaaatcat---ttgtaattaaggttaagtcagatttatgtttgatccaagatgaaatagt 329  Q
    ||||||||||||||||||||||||||| |||||     ||||||||| |||||||| ||||||||||||||  |||| |||||||    
T  6255168 gatgtcttaactcaatcacttgagctacatcatgagaggtaattaagtttaagtcaaatttatgtttgatcttagataaaatagt 6255084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 6260385 - 6260312
Alignment:
Q  254 ttaactcaatcacttgagctaaatcatttgtaattaaggttaagtcagatttatgtttgatccaagatgaaata 327  Q
    ||||||||||||||||||||||||  || ||||||||  |||| |||  ||||| |||||||| ||||||||||    
T  6260385 ttaactcaatcacttgagctaaattgttggtaattaaatttaactcaactttatatttgatcctagatgaaata 6260312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 24556901 - 24556851
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaaggtctaaacttgccctgcca 397  Q
    ||||||||||||| ||||||||||||| |||||||||| | || |||||||    
T  24556901 ggaataggctaggtcgagctaggctttacaaggtctaagcctggcctgcca 24556851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 6260618 - 6260577
Alignment:
Q  20 atagacacgttagtattttattgtctaagtcagtgtgtctaa 61  Q
    |||||||| |||||||||||| ||||||||| ||||||||||    
T  6260618 atagacacattagtattttatcgtctaagtcggtgtgtctaa 6260577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 32420180 - 32420236
Alignment:
Q  342 gggtaggaataggctaggccgagctaggctttgcaaggtctaaacttgccctgccaa 398  Q
    |||| ||||||||||||||||||||||||||||||||| |||| | || ||||||||    
T  32420180 gggtgggaataggctaggccgagctaggctttgcaaggcctaagcctggcctgccaa 32420236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 40727422 - 40727387
Alignment:
Q  349 aataggctaggccgagctaggctttgcaaggtctaa 384  Q
    |||||||||||||||| |||||||||||||||||||    
T  40727422 aataggctaggccgagttaggctttgcaaggtctaa 40727387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 382
Target Start/End: Original strand, 9270979 - 9271013
Alignment:
Q  348 gaataggctaggccgagctaggctttgcaaggtct 382  Q
    ||||||||||||||||| |||||||||||||||||    
T  9270979 gaataggctaggccgagttaggctttgcaaggtct 9271013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 24470802 - 24470735
Alignment:
Q  20 atagacacgttagtattttattgtctaagtcagtgtgtctaacgtttgaaattgatagagtgactcat 87  Q
    |||||| | |||||||||||| ||||||||| | ||||||||| |||||||||||| ||| |||||||    
T  24470802 atagacgcattagtattttatcgtctaagtcggggtgtctaacatttgaaattgatggagggactcat 24470735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 378
Target Start/End: Complemental strand, 9716555 - 9716524
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaag 378  Q
    ||||||||||||||||||||||||||||||||    
T  9716555 ggaataggctaggccgagctaggctttgcaag 9716524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 1845112 - 1845149
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaaggtctaa 384  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  1845112 ggaataggctaggccgagttaggctttgcaaggcctaa 1845149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 16202368 - 16202331
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaaggtctaa 384  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  16202368 ggaataggctaagccgagctaggctttgcaaggcctaa 16202331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 39848786 - 39848749
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaaggtctaa 384  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  39848786 ggaataggctaggccgagcaaggctttgcaaggcctaa 39848749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 5880068 - 5880104
Alignment:
Q  348 gaataggctaggccgagctaggctttgcaaggtctaa 384  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  5880068 gaataggctaggtcgagctaggctttgcaaggcctaa 5880104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 26659996 - 26660033
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaaggtctaa 384  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  26659996 ggaataggctaggccgagctaggctttgcaaggcctaa 26660033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 12154546 - 12154493
Alignment:
Q  345 taggaataggctaggccgagctaggctttgcaaggtctaaacttgccctgccaa 398  Q
    |||||||||||||||  || ||||||||||||||| |||||| || ||||||||    
T  12154546 taggaataggctagggtgaactaggctttgcaaggcctaaacctggcctgccaa 12154493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 22748988 - 22749037
Alignment:
Q  348 gaataggctaggccgagctaggctttgcaaggtctaaacttgccctgcca 397  Q
    ||||||| |||||||||||||||||||||||| |||| | || |||||||    
T  22748988 gaataggttaggccgagctaggctttgcaaggcctaagcctgacctgcca 22749037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Complemental strand, 55957887 - 55957838
Alignment:
Q  348 gaataggctaggccgagctaggctttgcaaggtctaaacttgccctgcca 397  Q
    |||||| ||||||||||||||||||||||||| |||| | || |||||||    
T  55957887 gaatagactaggccgagctaggctttgcaaggcctaagcctggcctgcca 55957838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 55957791 - 55957731
Alignment:
Q  445 ctttttagacctgaacctggtcttataaaagcccgatacgacatgctagcctgtttaaaag 505  Q
    |||||||| ||||| ||||| ||| | |||||| |||| ||| ||||||||||||||||||    
T  55957791 ctttttaggcctgagcctggccttttgaaagcctgatatgacctgctagcctgtttaaaag 55957731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 29563912 - 29563875
Alignment:
Q  342 gggtaggaataggctaggccgagctaggctttgcaagg 379  Q
    |||| |||||||||||||||||||||||||||||||||    
T  29563912 gggtgggaataggctaggccgagctaggctttgcaagg 29563875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 11837186 - 11837150
Alignment:
Q  348 gaataggctaggccgagctaggctttgcaaggtctaa 384  Q
    ||||||| |||||||||||||||||||||||||||||    
T  11837186 gaataggttaggccgagctaggctttgcaaggtctaa 11837150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 505
Target Start/End: Complemental strand, 51880539 - 51880383
Alignment:
Q  348 gaataggctaggccgagctaggctttgcaaggtctaaacttgccctgccaannnnnnnataaagcctaagcctgacatggggcctatcacaagcttgctt 447  Q
    ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||         ||||||||||| ||||| || || || ||| | || | |||    
T  51880539 gaataggttaggccgagttagactttgcaaggcctaagcttggcctgccatatttttt-taaagcctaagtctgacttgcggtctgtcataggcctactt 51880441  T
Q  448 tttagacctgaacctggtcttataaaagcccgatacgacatgctagcctgtttaaaag 505  Q
    ||||| |||||  |||||||||| |||||| |||| | | ||||||||||||||||||    
T  51880440 tttaggcctgagtctggtcttatgaaagcctgatatggcctgctagcctgtttaaaag 51880383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 20601405 - 20601442
Alignment:
Q  342 gggtaggaataggctaggccgagctaggctttgcaagg 379  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  20601405 gggtgggagtaggctaggccgagctaggctttgcaagg 20601442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 29697321 - 29697358
Alignment:
Q  342 gggtaggaataggctaggccgagctaggctttgcaagg 379  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  29697321 gggtaggaataggttaggccgagctaggcttcgcaagg 29697358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 9503653 - 9503705
Alignment:
Q  345 taggaataggctaggccgagctaggctttgcaaggtctaaacttgccctgcca 397  Q
    |||||||||| ||||||||| |||||||||||||| |||| | || |||||||    
T  9503653 taggaataggttaggccgagttaggctttgcaaggcctaagcctggcctgcca 9503705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 52426143 - 52426179
Alignment:
Q  348 gaataggctaggccgagctaggctttgcaaggtctaa 384  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  52426143 gaataggctaagccgagctaggctttgcaaggcctaa 52426179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 2758839 - 2758876
Alignment:
Q  342 gggtaggaataggctaggccgagctaggctttgcaagg 379  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  2758839 gggtaggaataggttaggccgagctaggctttgcaagg 2758876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 505
Target Start/End: Complemental strand, 41158240 - 41158143
Alignment:
Q  408 aaagcctaagcctgacatggggcctatcacaagcttgctttttagacctgaacctggtcttataaaagcccgatacgacatgctagcctgtttaaaag 505  Q
    |||||||||| |||||||| || || ||| | || | |||||||| ||||| ||||||||| | ||||||| ||||| | || |||||||||||||||    
T  41158240 aaagcctaagtctgacatgcggtctgtcataggcctactttttaggcctgagcctggtcttctgaaagcccaatacggcctgttagcctgtttaaaag 41158143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 37696886 - 37696848
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaaggtctaaa 385  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  37696886 ggaataggctaagccgagctaggctttgcaaggcctaaa 37696848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 2758968 - 2759001
Alignment:
Q  472 aaagcccgatacgacatgctagcctgtttaaaag 505  Q
    |||||| |||||||||||||||||||||||||||    
T  2758968 aaagcctgatacgacatgctagcctgtttaaaag 2759001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 16010893 - 16010861
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaagg 379  Q
    |||||||||||||||||||||||||||| ||||    
T  16010893 ggaataggctaggccgagctaggctttgtaagg 16010861  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 25412566 - 25412530
Alignment:
Q  348 gaataggctaggccgagctaggctttgcaaggtctaa 384  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  25412566 gaataggctagcccgagctaggctttgcaaggcctaa 25412530  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 40691039 - 40691071
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaagg 379  Q
    |||||||||||||||||||||||||||||||||    
T  40691039 ggaataggctaggccgagctaggctttgcaagg 40691071  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 44652782 - 44652750
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaagg 379  Q
    |||||||||||||||||||||||||||||||||    
T  44652782 ggaataggctaggccgagctaggctttgcaagg 44652750  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 22738426 - 22738463
Alignment:
Q  342 gggtaggaataggctaggccgagctaggctttgcaagg 379  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  22738426 gggtgggaataagctaggccgagctaggctttgcaagg 22738463  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 377
Target Start/End: Original strand, 24358 - 24388
Alignment:
Q  347 ggaataggctaggccgagctaggctttgcaa 377  Q
    |||||||||||||||||||||||||||||||    
T  24358 ggaataggctaggccgagctaggctttgcaa 24388  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 379
Target Start/End: Complemental strand, 53268 - 53238
Alignment:
Q  349 aataggctaggccgagctaggctttgcaagg 379  Q
    |||||||||||||||||||||||||||||||    
T  53268 aataggctaggccgagctaggctttgcaagg 53238  T

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Target: scaffold0330 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 11282 - 11245
Alignment:
Q  342 gggtaggaataggctaggccgagctaggctttgcaagg 379  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  11282 gggtgggaataggctaggccgagctgggctttgcaagg 11245  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 14830442 - 14830486
Alignment:
Q  353 ggctaggccgagctaggctttgcaaggtctaaacttgccctgcca 397  Q
    ||||||||||||||||||||||||||| |||| | || |||||||    
T  14830442 ggctaggccgagctaggctttgcaaggcctaagcctggcctgcca 14830486  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 15529915 - 15529951
Alignment:
Q  348 gaataggctaggccgagctaggctttgcaaggtctaa 384  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  15529915 gaataggctaggctgagctaggctttgcaaggcctaa 15529951  T

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