View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_high_22 (Length: 508)

Name: NF16554_high_22
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_high_22
NF16554_high_22
[»] chr8 (6 HSPs)
chr8 (155-394)||(14002083-14002325)
chr8 (12-142)||(5768575-5768705)
chr8 (391-491)||(14001519-14001612)
chr8 (166-259)||(5768911-5768996)
chr8 (336-386)||(15216069-15216119)
chr8 (337-378)||(30579033-30579074)
[»] chr1 (4 HSPs)
chr1 (336-386)||(13027298-13027348)
chr1 (336-381)||(35829195-35829240)
chr1 (336-386)||(32083542-32083592)
chr1 (336-386)||(37463659-37463709)
[»] chr4 (2 HSPs)
chr4 (337-386)||(16002350-16002399)
chr4 (336-386)||(39707897-39707947)
[»] chr3 (2 HSPs)
chr3 (336-385)||(9258321-9258370)
chr3 (336-386)||(29816940-29816990)
[»] chr7 (4 HSPs)
chr7 (336-386)||(36870086-36870136)
chr7 (336-386)||(21520230-21520280)
chr7 (336-386)||(32630043-32630093)
chr7 (336-377)||(20499544-20499585)
[»] chr2 (3 HSPs)
chr2 (336-381)||(13148757-13148802)
chr2 (336-386)||(24584403-24584453)
chr2 (336-381)||(876589-876634)
[»] chr6 (3 HSPs)
chr6 (336-386)||(5258947-5258997)
chr6 (336-386)||(5631252-5631302)
chr6 (336-386)||(20428434-20428484)
[»] chr5 (4 HSPs)
chr5 (336-386)||(3301284-3301334)
chr5 (336-386)||(3394146-3394196)
chr5 (350-387)||(14099775-14099812)
chr5 (336-381)||(43558608-43558653)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 155 - 394
Target Start/End: Complemental strand, 14002325 - 14002083
Alignment:
Q  155 taatattgttgatatctattttctattgctgttacaagacatttgaagggctgaagaggattgaagatggaaatgcaactttggtgtattacaatttcac 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14002325 taatattgttgatatctattttctattgctgttacaagacatttgaagggctgaagaggattgaagatggaaatacaactttggtgtattacaatttcac 14002226  T
Q  255 aagacagtgggtgagacagtgagattggttaaatttatgcggtctaggaatggaaacctgaca-----tttgaagtctttttcataggatgtacttaccg 349  Q
    ||  |||||| |||||| ||||| |||| |||| || || |||||||||||||||||||||||      ||||||||||||||||||||||||||||||     
T  14002225 aa-tcagtggctgagacggtgaggttggctaaaattctgtggtctaggaatggaaacctgacaattatattgaagtctttttcataggatgtacttacca 14002127  T
Q  350 aacacatccaagagctagcacggagatgtatgtttttcgcacata 394  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||    
T  14002126 aacacat-caagagctagcacgaagatgtatgtttttcgcacata 14002083  T

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Target: chr8; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 5768575 - 5768705
Alignment:
Q  12 tattattctacaacgtgaatcagcatttggatcttatttcatgttcaggattacaagttaggttgcatgcttgagtagtgtagtggatgtccttggttta 111  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5768575 tattcttctacaacgtgaattagcatttggatcttatttcatgttcaggattacaagttaggttgcatgcttgagtagtgtagtggatgtccttggttta 5768674  T
Q  112 tctcactgggcacagtaaggtgcagagcaaa 142  Q
    |||||||||||||||||||||||||||||||    
T  5768675 tctcactgggcacagtaaggtgcagagcaaa 5768705  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 14001612 - 14001519
Alignment:
Q  391 catagtttgacactagcctgttagtagcatttaatctctcagcgatgacttgtaagttgtaacttccttgttacagaacttggaaattttagaccttgtt 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||    
T  14001612 catagtttgacactagcctgttagtagcatttaatctctcagcgatgactt-------gtaacttccttgttacagaacttggaaatttcagaccttgtt 14001520  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 5768911 - 5768996
Alignment:
Q  166 atatctattttctattgctgttacaagacatttgaagggctgaagaggattgaagatggaaatgcaactttggtgtattacaatttcacaagac 259  Q
    |||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5768911 atatctattttctatttctgttacaagacatttgaa--------gaggattgaagatggaaatgcaactttggtgtattacaacttcacaagac 5768996  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 15216119 - 15216069
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||||||||    
T  15216119 ggatgtactgacagaacacatccaagagttagcaccgagatgtatgttttt 15216069  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 30579074 - 30579033
Alignment:
Q  337 gatgtacttaccgaacacatccaagagctagcacggagatgt 378  Q
    ||||||||||| |||||||| ||||||||||||| |||||||    
T  30579074 gatgtacttacagaacacatacaagagctagcactgagatgt 30579033  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 13027348 - 13027298
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  13027348 ggatgtacttacagaaaacatccaagagctagcactgagatgtatgttttt 13027298  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 35829240 - 35829195
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatg 381  Q
    |||||||||||| |||||||||||||||||||||| || |||||||    
T  35829240 ggatgtacttacagaacacatccaagagctagcaccgatatgtatg 35829195  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 32083592 - 32083542
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  32083592 ggatgtactgacagaacacatccaagagttagcaccgagatgtatgctttt 32083542  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 37463709 - 37463659
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    |||||| ||||| ||||||||||||||| |||||| |||||||||| ||||    
T  37463709 ggatgttcttacggaacacatccaagagttagcaccgagatgtatgctttt 37463659  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 16002350 - 16002399
Alignment:
Q  337 gatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  16002350 gatgtacttacggaacacatccaagagttagcaccgagatgtatgttttt 16002399  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 39707897 - 39707947
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    |||||||||||| ||||||||||||||| | |||| || ||||||||||||    
T  39707897 ggatgtacttacagaacacatccaagagtttgcaccgatatgtatgttttt 39707947  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 9258321 - 9258370
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgtttt 385  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  9258321 ggatgtacttacggaacacatccaagagttagcaccgagatgtatgtttt 9258370  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 29816940 - 29816990
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||||||  ||||||||| |||| |||||| |||||||||||||||    
T  29816940 ggatgtacttacaaaacacatcctagagttagcaccgagatgtatgttttt 29816990  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 36870136 - 36870086
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||| || |||||||||||||||||||||| |||||||||| ||||    
T  36870136 ggatgtactgacggaacacatccaagagctagcaccgagatgtatgctttt 36870086  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 21520280 - 21520230
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||| |||| ||||||||||||||| |||||| |||||||||| ||||    
T  21520280 ggatgtatttacggaacacatccaagagttagcaccgagatgtatgctttt 21520230  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 32630043 - 32630093
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  32630043 ggatgtactaacggaacacatccaagagttagcaccgagatgtatgctttt 32630093  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 20499544 - 20499585
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatg 377  Q
    |||||||||| | |||||||||||||||||||||| ||||||    
T  20499544 ggatgtacttgcggaacacatccaagagctagcaccgagatg 20499585  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 13148757 - 13148802
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatg 381  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||    
T  13148757 ggatgtacttacagaacacatccaagagctagcactaagatgtatg 13148802  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 24584453 - 24584403
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||| || ||||||||||||||| || ||| |||||||||||||||    
T  24584453 ggatgtactaacggaacacatccaagagttatcaccgagatgtatgttttt 24584403  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 876589 - 876634
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatg 381  Q
    |||||||||||| |||||||||||||||| |||||  |||||||||    
T  876589 ggatgtacttacggaacacatccaagagcgagcaccaagatgtatg 876634  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 5258997 - 5258947
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  5258997 ggatgtactgacggaacacatccaagagttagcaccgagatgtatgctttt 5258947  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 5631252 - 5631302
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||| || ||||||||||||||| |||||| |||||| ||||||||    
T  5631252 ggatgtactgacggaacacatccaagagttagcaccgagatgcatgttttt 5631302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 20428484 - 20428434
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    |||||||||||| |||||||| |||||| |||||| |||||||||| ||||    
T  20428484 ggatgtacttacggaacacattcaagagttagcaccgagatgtatgctttt 20428434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 3301284 - 3301334
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  3301284 ggatgtactgacagaacacatccaagagttagcaccgagatgtatgctttt 3301334  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 3394146 - 3394196
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatgttttt 386  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||| ||||    
T  3394146 ggatgtactgacggaacacatccaagagttagcaccgagatgtatgctttt 3394196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 14099775 - 14099812
Alignment:
Q  350 aacacatccaagagctagcacggagatgtatgtttttc 387  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  14099775 aacacatgcaagagctagcaccgagatgtatgtttttc 14099812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 43558653 - 43558608
Alignment:
Q  336 ggatgtacttaccgaacacatccaagagctagcacggagatgtatg 381  Q
    |||||||||||| |||||||||||||||||| ||| ||||| ||||    
T  43558653 ggatgtacttacggaacacatccaagagctaacaccgagatatatg 43558608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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