View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_24 (Length: 505)
Name: NF16554_high_24
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 5947507 - 5947012
Alignment:
| Q |
1 |
ttaagcttttacaaattaccttactgaatttgagttaactttcatcgcatgtcctaatttttagctcaatggataaagtgatggattatgatcttgaccn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5947507 |
ttaagcttttacaaattaccttactgaatttgagttaactttcatcgcatgtcctaatttttagctcaatggataaagtgatggattatgatcttgacca |
5947408 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnngcgatggattatgaaataagtaagcatatgaatattgtttcgttcattctctaaaattgcaagcactctgttccgtgccggtgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5947407 |
aaaaaaaaaaaaaaagcgatggattatgaaataagtaagcatatgaatattgtttcgttcattctctaaaattgcaagccctctgttccgtgccggtgac |
5947308 |
T |
|
| Q |
201 |
tctacactctaatcaaatgaacctacattgatccgaatctcaatctctgcaaatctcacacgctttcttttccgttcaaaaaaccgttattccctccgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5947307 |
tctacactctaatcaaatgaacctacattgatccgaatttcaatctctgcaaatctcacacgctttcttttccgttcaaaaaaccgttattccctccgaa |
5947208 |
T |
|
| Q |
301 |
acagatcggaaaattacttccac------cgtcgccggtaagcgatccacttctcattcgtttttcatttcttgtatcaacgccgctatcatgcttctgc |
394 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5947207 |
acagatcggaaaattacttccaccgtcaccgtcgccggtaagcgatccacttctcattcgtttttcatttcttgtatcaacgccgctatcatgcttctgc |
5947108 |
T |
|
| Q |
395 |
attgtttacaaatcacctcaatctgttgcatcaatgaaaactccattttcagatctctctgtttaatttccaatgctcatgtttttgcactgtttt |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5947107 |
attgtttacaaatcacctcaatctgttgcatcaatgaaaactccattttcagatctctctgtttaatttccaatgctcatgtttttgcactgtttt |
5947012 |
T |
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