View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_33 (Length: 453)
Name: NF16554_high_33
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 2513413 - 2512987
Alignment:
| Q |
18 |
gaatctccccaccatttttcactacacaagaacatttcttatggtcagagcatccattagtacaattacatccttttggagggacaagattgcaacattc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2513413 |
gaatctccccaccatttttcactacacaagaacatttcttatggtcagagcatccattagtacaattacatccttttggagggataagattgcaacattc |
2513314 |
T |
|
| Q |
118 |
aggatatatcatctcggttacgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatattggaattttctctttcccgtaggaaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2513313 |
aggatatatcatctcggttacgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatattggaattttctctttcccgtaggaaata |
2513214 |
T |
|
| Q |
218 |
tcttcgacacatagaccttctcttgttttgagttttttagatttcttcacttccttgaagacaagctctggttgtcccgggattcttcgcaagcgaaact |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2513213 |
tcttcgacacatagaccttctcttgttttgaattttttagatttcttcacttccttgaaggaaagctctggttgtcccgggattcttcgcaagcaaaact |
2513114 |
T |
|
| Q |
318 |
tataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactacataaagtccatcataaacatatatcttgctttttccatccatcgattc |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2513113 |
tataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactacataaagtccatcataaacatatttcttgctttttccatccatcgattc |
2513014 |
T |
|
| Q |
418 |
agagcctcgtatcaccctaacagaatt |
444 |
Q |
| |
|
|||||| |||||||||||||||||||| |
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| T |
2513013 |
agagccccgtatcaccctaacagaatt |
2512987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 2497244 - 2496819
Alignment:
| Q |
18 |
gaatctccccaccatttttcactacacaagaacatttcttatggtcagagcatccattagtacaattacatccttttggagggacaagattgcaacattc |
117 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2497244 |
gaatctcgccaccattttttactacacaagaacatttcttatggtcagagcatccattagtacaattacatccttttggagggacaagattgcaacattc |
2497145 |
T |
|
| Q |
118 |
aggatatatcatctcggttacgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatattggaattttctctttcccgtaggaaata |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
2497144 |
aggatatatcatctcggttatgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatataggaattt-ctctttcccgtaggaaata |
2497046 |
T |
|
| Q |
218 |
tcttcgacacatagaccttctcttgttttgagttttttagatttcttcacttccttgaagacaagctctggttgtcccgggattcttcgcaagcgaaact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
2497045 |
tcttcgacacatagaccttctcttgttttggactttttagatttcttcacttccttcaaggcaagctctggttgacccgggattcttcgcaagctaaact |
2496946 |
T |
|
| Q |
318 |
tataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactacataaagtccatcataaacatatatcttgctttttccatccatcgattc |
417 |
Q |
| |
|
|||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||| |
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|
| T |
2496945 |
tataaaccatcttcccacgtggccctatatcctgccaacatgactcaactacataaagtccatcgtaaacatatatctttcttttaccgtccattgattc |
2496846 |
T |
|
| Q |
418 |
agagcctcgtatcaccctaacagaatt |
444 |
Q |
| |
|
| |||| |||||||| ||||||||||| |
|
|
| T |
2496845 |
atagccccgtatcactctaacagaatt |
2496819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 4259864 - 4259435
Alignment:
| Q |
18 |
gaatctccccaccatttttcactacacaagaacatttcttatggtcagagcatccattagtacaattacatccttttggagggacaagattgcaacattc |
117 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |
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|
| T |
4259864 |
gaatctcccccccatttttgagtacacaagaacatttctcatggtcagagcatccattagtacaattacagccttttggagggacaatattgcaacaatc |
4259765 |
T |
|
| Q |
118 |
aggatatatcatctcggttacgtatttaaatgtagggggtttctcgttatctatggtgttcacagcacatattggaattttctctttcccgtaggaaata |
217 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4259764 |
aggatacatcatcttagttatgtatttaaatggagggggtttctcgttatctatggtgttcacagcacatatgggaattttctctttcccgtaggaaata |
4259665 |
T |
|
| Q |
218 |
tcttcgacacatagaccttctcttgttttg---agttttttagatttcttcacttccttgaagacaagctctggttgtcccgggattcttcgcaagcgaa |
314 |
Q |
| |
|
|| | || |||||||||||||||||||| | |||||||||||||||| |||||| | ||||||||||||| ||||| ||||||||||||||| |
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|
| T |
4259664 |
tcaacaacggatagaccttctcttgttttggacaactttttagatttcttcagttccttccaagcaagctctggttgacccggctttcttcgcaagcgaa |
4259565 |
T |
|
| Q |
315 |
acttataaatcagcttcccatgtggtcctatatcctgccaacatgactcaactacataaagtccatcataaacatatatcttgctttttccatccatcga |
414 |
Q |
| |
|
||||||||| ||||||||||||||| || |||||||||||| ||||||||||| |||| |||||||| |||||||||||| |||||||||||||| || |
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|
| T |
4259564 |
acttataaaccagcttcccatgtggccccatatcctgccaatatgactcaacttcatagagtccatcgtaaacatatatcctgctttttccatccgctga |
4259465 |
T |
|
| Q |
415 |
ttcagagcctcgtatcaccctaacagaatt |
444 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
4259464 |
ttcagagccccgtatcaccctaacagaatt |
4259435 |
T |
|
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