View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_37 (Length: 437)
Name: NF16554_high_37
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 39231164 - 39231572
Alignment:
| Q |
11 |
gagtgagatgaaagagcttatagcttcagctaaagaacatgtagcaaatgagtgcaagccagtgcagaatcttttattctcggattgcaaacttggaatt |
110 |
Q |
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| T |
39231164 |
gagtgagatgaaagagcttatagcttcagctaaagaacatgtagcaaatgagtgcaagccagtgcagaatcttttattctcggattgcaaacttggaatt |
39231263 |
T |
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| Q |
111 |
aatgatcttccaaaccatgtgtatgaagttgattgggatgtaatattggttgacgggcctcgtggggattggccggaagctcccgggagaatgtcggcga |
210 |
Q |
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| T |
39231264 |
aatgatcttccaaaccatgtgtatgaagttgattgggatgtaatattggttgacgggcctcgtggggattggccggaagctcccgggagaatgtcggcga |
39231363 |
T |
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| Q |
211 |
tatttacagccggggtgttggctagaagtaagaaaggtggtaacccaaagactcatgtgtttttgcatgatttttctggtgaagttgaacaagtttgtgg |
310 |
Q |
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| T |
39231364 |
tatttaccgccggggtgttggctagaagtaagaaaggtggtaacccaaagactcatgtgtttttgcatgatttttctggtgaagttgaacaagtttgtgg |
39231463 |
T |
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| Q |
311 |
gaatgagtttttgtgtaaagagaatttgttggaagcaagtgagagtatggggcattatgttttggaaaggatgaatgagagcagtgttcagtattgtaaa |
410 |
Q |
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| T |
39231464 |
gaatgagtttttgtgtaaagagaatttgttggaagcaagtgagagtatggggcattatgttttggaaaggatgaatgagagcagtgttcagtattgtaaa |
39231563 |
T |
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| Q |
411 |
gggtcttct |
419 |
Q |
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| T |
39231564 |
gggtcttct |
39231572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 33371872 - 33371810
Alignment:
| Q |
183 |
ccggaagctcccgggagaatgtcggcgatatttacagccggggtgttggctagaagtaagaaa |
245 |
Q |
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| T |
33371872 |
ccggcagctccggggagaatgtcggcgatctttacagcagcagtgttggctaggagcaagaaa |
33371810 |
T |
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