View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_high_4 (Length: 784)
Name: NF16554_high_4
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_4 |
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| [»] scaffold2079 (2 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 114 - 410
Target Start/End: Complemental strand, 941 - 643
Alignment:
| Q |
114 |
agtagagatctttcgtcgcttgtattcattgctgcaaacccgatgcttgcaaacaatagcacaaaaaattggccaaataattctccaacttcgttcaatc |
213 |
Q |
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| T |
941 |
agtagagattttcggttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatc |
842 |
T |
|
| Q |
214 |
tagaaaagggttgaataaataaaatattagaaggaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatg |
313 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
841 |
tagaaa-gggttgaataaataaaatattagaagaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatg |
743 |
T |
|
| Q |
314 |
aagttgaagttgcatttggaattgtagctcctaatacttccattgttcttcaaactaaacttttg---atgagtacaacacgttcttcaatattgctttt |
410 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| |
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| T |
742 |
aagttgaagttgcatttggaattgtagctcctaattctgccattgttcttcaaactcaacttttgatgatgagtacaacacattcttcaatattgctttt |
643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 453 - 696
Target Start/End: Complemental strand, 612 - 372
Alignment:
| Q |
453 |
aagaaaaaacatggataaagaggtttgacacaatttggaa-agacagtgacccataaaaacgtttaatacgaattcgttttatactatagttctcgattg |
551 |
Q |
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||||||||||||||| || ||| | ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
612 |
aagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatactata---ctcgattg |
516 |
T |
|
| Q |
552 |
agaaacttcacgaccaaagagtaaacaagattgaaccggtcccaccaaatagatttccatttattccttcatttttatatt--tagtttttgtctttaat |
649 |
Q |
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| T |
515 |
a--actttcttgtccaacgagcaaaaacaattgaacctgtcccaccaaatagatt-ccatttattccttcatttttatattgttagtttttgtctttaat |
419 |
T |
|
| Q |
650 |
cttgtaaatgtttgacatttttccaacttgtgcatttgagcaaagtc |
696 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
418 |
cttttaaatgtttgacatttttccaacttgtgcatttgagcatagtc |
372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 3e-81; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 23 - 410
Target Start/End: Complemental strand, 6242806 - 6242427
Alignment:
| Q |
23 |
tggaaagaaacttttgatatgcagctgtaacattgtcacaagcaccaaaaccaagtagtaaagataaaccataaaaactaacgccatcattagtagagat |
122 |
Q |
| |
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||||| |||||| ||||| || ||||||||||||||||||||||||||| | | |||||||||| ||| ||||| || |||||||| ||||||||| |
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| T |
6242806 |
tggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaaagaaaaatagcgaaaaccaaagccatcatcagtagagat |
6242707 |
T |
|
| Q |
123 |
ctttcgtcgcttgtattcattgctgcaaacccgatgcttgcaaacaatagcacaaaaaattggccaaataattctccaacttcgttcaatctagaaaagg |
222 |
Q |
| |
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|| ||| |||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
6242706 |
tttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaattggccaaataattctccaacttcattcaatctag-aaagg |
6242608 |
T |
|
| Q |
223 |
gttgaataaataaaatattagaaggaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatg------aag |
316 |
Q |
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||||||| ||| || ||| | || | |||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |
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| T |
6242607 |
gttgaatgaattcaa---------gaaaa----aattaaatgtttgagtagtgattgaaaattgaagttatttaccttattgaatccgatgaagttcaag |
6242521 |
T |
|
| Q |
317 |
ttgaagttgcatttggaattgtagctcctaatacttccattgttcttcaaactaaacttttgatgagtacaacacgttcttcaatattgctttt |
410 |
Q |
| |
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|| ||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||| |||||||||| |||||||||||||||||| |
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| T |
6242520 |
ttcaagttgcatttggaattgtagctcctaattctgccgttgttcttcaaacttaacttttgataagtacaacacattcttcaatattgctttt |
6242427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 493 - 704
Target Start/End: Complemental strand, 6242388 - 6242177
Alignment:
| Q |
493 |
agacagtgacccat-aaaaacgtttaatacgaattcgttttatactatagttctcgattgagaaacttcacgaccaaagagtaaacaagattgaaccggt |
591 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| | |||| ||| ||| || |||||||| || |
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| T |
6242388 |
agacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattga--aatttcttgtccaacgagcaaagaaaattgaacctgt |
6242291 |
T |
|
| Q |
592 |
cccaccaaatagatttccatttattccttcatttttatatt--tagtttttgtctttaatcttgtaaatgtttgacatttttccaacttgtgcatttgag |
689 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| |
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| T |
6242290 |
cccaccaaatagatt-ccatttattccttcatttttatattgttagtttttgtctttaatcttttaaatgtttgacattttttcaacttgttcatttgag |
6242192 |
T |
|
| Q |
690 |
caaagtcacacaatt |
704 |
Q |
| |
|
|| ||||||| |||| |
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|
| T |
6242191 |
catagtcacataatt |
6242177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 278 - 542
Target Start/End: Original strand, 6333713 - 6333977
Alignment:
| Q |
278 |
tgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaatt------gtagctcctaatacttccattgttcttcaaactaa |
371 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
6333713 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgcatttggaattgtaattgtagctcctaattcagccattgttcttcaaactaa |
6333812 |
T |
|
| Q |
372 |
acttttgatgagtacaacacgttcttcaatattgcttttcttatataatagttg-gtgtttggaatagacttttctccttgaaagaaaaaacatggataa |
470 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || | || ||| | | ||||||||||| ||| || |
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|
| T |
6333813 |
acttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagagatat-------gaagaaaaaacagggaaaa |
6333905 |
T |
|
| Q |
471 |
agaggtttgacacaatttgga-aagacagtgacccataaaaacgtttaatacgaattcgttttatactatagt |
542 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
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|
| T |
6333906 |
agaggtatgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaa-tcgttttatacgatagt |
6333977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 248 - 439
Target Start/End: Original strand, 6326203 - 6326397
Alignment:
| Q |
248 |
aacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctga------tgaagttgaagttgcatttggaattgtagc |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
6326203 |
aacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgtagc |
6326302 |
T |
|
| Q |
342 |
tcctaatacttccattgttcttcaaactaaacttttgatgagtacaacacgttcttcaatattgcttttcttatataatagttggtgtttggaataga |
439 |
Q |
| |
|
| ||||| | ||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
6326303 |
ttctaattcagccattgttcgttaaact---cttttgatgagtacaacacattcttcaatattgcttttcttatagaagagttgagttttggaataga |
6326397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 6346481 - 6346677
Alignment:
| Q |
36 |
ttgatatgcagctgtaacattgtcacaagcaccaaaaccaagtagtaaagataaaccataaaaactaacgccatcattagtagagatctttcgtcgcttg |
135 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||| ||| | ||| ||||| |||| |
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|
| T |
6346481 |
ttgatgtgaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatcagaagtggtgatttttcgatacttg |
6346580 |
T |
|
| Q |
136 |
tattcattgctgcaaacccgatgcttgcaaacaatagcacaaaaaattggccaaataattctccaacttcgttcaatctagaaaagggttgaataaat |
233 |
Q |
| |
|
||||| ||| ||||||||| || |||| ||||||||| |||||||||||| |||| || ||||||||| ||||| |||| |||||||||||||||| |
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|
| T |
6346581 |
tattcgttgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatagttttccaacttcattcaagctag-aaagggttgaataaat |
6346677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 353 - 437
Target Start/End: Complemental strand, 6220986 - 6220902
Alignment:
| Q |
353 |
ccattgttcttcaaactaaacttttgatgagtacaacacgttcttcaatattgcttttcttatataatagttggtgtttggaata |
437 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||| ||||||||||| |
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|
| T |
6220986 |
ccattgttcttcaaactcaacttttgatgagtacaacacatgcttcaatattggtttacttatataatagttgatgtttggaata |
6220902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 6326013 - 6326085
Alignment:
| Q |
147 |
gcaaacccgatgcttgcaaacaatagcacaaaaaattggccaaataattctccaacttcgttcaatctagaaa |
219 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||||||||||||||| ||| ||||| ||||||||||||| |
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|
| T |
6326013 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaa |
6326085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 6333490 - 6333562
Alignment:
| Q |
147 |
gcaaacccgatgcttgcaaacaatagcacaaaaaattggccaaataattctccaacttcgttcaatctagaaa |
219 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||||||||||||||| ||| ||||| ||||||||||||| |
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|
| T |
6333490 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaa |
6333562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 6333352 - 6333440
Alignment:
| Q |
24 |
ggaaagaaacttttgatatgcagctgtaacattgtcacaagcaccaaaaccaagtagtaaagataaaccataaaaactaacgccatcat |
112 |
Q |
| |
|
||||||||||| ||||| || | || |||| |||||||||||||||| ||| |||||||||| ||||||| |||||||| |||||||| |
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|
| T |
6333352 |
ggaaagaaactcttgatgtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatcat |
6333440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 6325899 - 6325963
Alignment:
| Q |
48 |
tgtaacattgtcacaagcaccaaaaccaagtagtaaagataaaccataaaaactaacgccatcat |
112 |
Q |
| |
|
|||| |||||| |||||||||||| ||| |||||||||| ||||||| |||||||| |||||||| |
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|
| T |
6325899 |
tgtatcattgttacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatcat |
6325963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 536
Target Start/End: Original strand, 6330641 - 6330679
Alignment:
| Q |
497 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
536 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6330641 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6330679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 536
Target Start/End: Original strand, 6347119 - 6347157
Alignment:
| Q |
497 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
536 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6347119 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6347157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 538
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
497 |
agtgacccataaaaacgtttaatacgaattcgttttatacta |
538 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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