View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_high_40 (Length: 416)
Name: NF16554_high_40
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 25340061 - 25340330
Alignment:
| Q |
1 |
gttctgataaacgtataatgagtgtggtagcaaaagttgtgaagaaaatgaaagttccagtgacattcatcaacgtaacacaaatatcagagtatagaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25340061 |
gttctgataaacgtataatgagtgtggtagcaaaagttgtgaagaaaatgaaagttccagtgacattcatcaacgtaacacaaatatcagagtatagaat |
25340160 |
T |
|
| Q |
101 |
tgatggtcattcttcagtgtatactgaaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagattgcatacattggtgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25340161 |
tgatggtcattcttcagtgtatactgaaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagattgtatacattggtgtttg |
25340260 |
T |
|
| Q |
201 |
cctggtgttccagatacatggaatcaaatatttttggcaatgttataacaaaatatcttgcacaaaaatc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25340261 |
cctggtgttccagatacatggaatcaaatatttttggcaatgttataacaaaatatcttgcacaaaaatc |
25340330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 307 - 398
Target Start/End: Original strand, 25340378 - 25340469
Alignment:
| Q |
307 |
gtgacatgaagatgttcactattttacttgtgtacattcatttttcaatactatttgtgtgatatatctaacaaatttttacttgcaaaacc |
398 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25340378 |
gtgacatgaagatgttcactattttatttgtgtacattcatttttcaatactatttgtgtgatatatctaacaaatttttacttgcaaaacc |
25340469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 5232736 - 5232973
Alignment:
| Q |
7 |
ataaacgtataatgagtgtggtagcaaaagttgtgaagaaaatgaaagttccagtgacattcatcaacgtaacacaaatatcagagtatagaattgatgg |
106 |
Q |
| |
|
||||| |||| |||||||| ||||| |||||| | |||||||||||||||||||| ||| ||||||| | |||||||| || ||||||||||||||||| |
|
|
| T |
5232736 |
ataaaggtatgatgagtgttgtagccaaagttatcaagaaaatgaaagttccagtaacagtcatcaatattacacaaatttctgagtatagaattgatgg |
5232835 |
T |
|
| Q |
107 |
tcattcttcagtgtatactgaaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagattgcatacattggtgtttgcctggt |
206 |
Q |
| |
|
|||||| ||||| |||||||||| ||| || |||||||||| |||||| || ||||| |||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5232836 |
tcattcctcagtttatactgaaactggtggcaaattgttaaatgaagaggaaaggactaatccattgaatgctgattgtatacattggtgtttgcctggt |
5232935 |
T |
|
| Q |
207 |
gttccagatacatggaatcaaatatttttggcaatgtt |
244 |
Q |
| |
|
||||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
5232936 |
gttcctgatacttggaatcaaatattctttgcaatgtt |
5232973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 51877588 - 51877539
Alignment:
| Q |
180 |
gattgcatacattggtgtttgcctggtgttccagatacatggaatcaaat |
229 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
51877588 |
gattgcttacactggtgtttgcctggtgttcctgatacatggaatgaaat |
51877539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 4075309 - 4075260
Alignment:
| Q |
175 |
atgcagattgcatacattggtgtttgcctggtgttccagatacatggaat |
224 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| || ||||| |||||| |
|
|
| T |
4075309 |
atgcagattgcatacattggtgtctccctggtgtgcctgatacttggaat |
4075260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University