View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_41 (Length: 416)
Name: NF16554_high_41
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 159 - 402
Target Start/End: Complemental strand, 44920002 - 44919761
Alignment:
| Q |
159 |
ggggttctcttggctatcccatatctatatcacccatctaattaagagcatttgatggagatgataagtaatctttttcaacttaaccaaaagtagggag |
258 |
Q |
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| T |
44920002 |
ggggttctcttggctatctcatatctatatcacccatctaattaagagcacttgatggagatgataagtaatctttttcaacttaaccaaaagtacgaag |
44919903 |
T |
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| Q |
259 |
tttgaattttgccctaaaaatatagtagtgttaaatcacttgtgagattttgccactcaccgttcnnnnnnnntaataaatacactaccctctaccctag |
358 |
Q |
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| T |
44919902 |
tttgaattctg-cctaaaaatatagtagtgttaaatcagttgtgagattttgccactcaccgttcaaaaaaaataataaatacactaccctcta-cctag |
44919805 |
T |
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| Q |
359 |
caggccgcacacatacatgaactaaattggcgtaagtttctttt |
402 |
Q |
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| T |
44919804 |
caggccgcacacatacatgaactaaattggcgtaggtttctttt |
44919761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 44920144 - 44920070
Alignment:
| Q |
8 |
tccatgttaatgtcattagagtgcttgaccatacaaatactctatattactagagtattaatatattaaatataa |
82 |
Q |
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| T |
44920144 |
tccatgttaatgtcattggagtgtttgaccatacaaatactctatattactagagtattaatatattaaatataa |
44920070 |
T |
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