View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_46 (Length: 384)
Name: NF16554_high_46
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_46 |
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| [»] scaffold0428 (1 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 34 - 365
Target Start/End: Complemental strand, 905937 - 905606
Alignment:
| Q |
34 |
ttttaccactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttggagg |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905937 |
ttttaccactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttggagg |
905838 |
T |
|
| Q |
134 |
ttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctct |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905837 |
ttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctct |
905738 |
T |
|
| Q |
234 |
ttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaata |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905737 |
ttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaata |
905638 |
T |
|
| Q |
334 |
ttttgtaatttacatttgatctttcacataga |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
905637 |
ttttgtaatttacatttgatctttcacataga |
905606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 36 - 365
Target Start/End: Original strand, 894708 - 895037
Alignment:
| Q |
36 |
ttaccactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttggaggtt |
135 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
894708 |
ttaccactcaattctagtccaaatgctaactcattgagttgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaacttggtggtt |
894807 |
T |
|
| Q |
136 |
gattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctcttt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| |
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| T |
894808 |
gattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtggaggggtcccactggataaaaacaaggtttctcttt |
894907 |
T |
|
| Q |
236 |
ttcttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaatatt |
335 |
Q |
| |
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||||||||||| |||||| || || || ||||||||| |||||||| | || |||| |||||||||||||| || ||||||||| || ||||||||| | |
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| T |
894908 |
ttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacacacatcaagaaatgat |
895007 |
T |
|
| Q |
336 |
ttgtaatttacatttgatctttcacataga |
365 |
Q |
| |
|
||||| | || | ||||||||||||||||| |
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|
| T |
895008 |
ttgtactctaaacttgatctttcacataga |
895037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 563986 - 564075
Alignment:
| Q |
41 |
actcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttgg |
130 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||| | ||||||| |||||||||||| ||||| | ||| ||| ||||||||||| |
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| T |
563986 |
actcaattctaaccctaatgctaactcattcatttggttttgagaaattgttccaccactaccaaatgaaacaaaaaccacagaatttgg |
564075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 38 - 330
Target Start/End: Original strand, 8294662 - 8294951
Alignment:
| Q |
38 |
accactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttggaggttga |
137 |
Q |
| |
|
|||||||||||||| ||||| |||||||| || ||||| || ||||| | |||||||||||| |||||| | ||| ||||||||||| |||| ||||| |
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| T |
8294662 |
accactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagacaaaaagaacagaacttggttgttga |
8294761 |
T |
|
| Q |
138 |
ttctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctcttttt |
237 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| ||||| ||| |||||||| ||||| || ||||| || |||||||||| |||||||||| | | |
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| T |
8294762 |
ttttccaaccaccttaaacacattga---catgtttgcttcattatttgactcattcctaatcataggtccaaccggataaacactaggtttctctctat |
8294858 |
T |
|
| Q |
238 |
cttgaagaacccttataacatctggctccaaatcagtgaaagtgctgattataaaaccatcaactaatgtgagtttttgacaaacttcaagaa |
330 |
Q |
| |
|
|||||||||||||||| || || || ||||||||||||||||| | || |||| |||||||| |||| | ||||||||| || ||||||| |
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| T |
8294859 |
cttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaacaatgataatttttgacacacatcaagaa |
8294951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 252
Target Start/End: Complemental strand, 33257093 - 33256882
Alignment:
| Q |
38 |
accactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttggaggttga |
137 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||| || ||||| | |||||||||||| ||||| | ||| ||| ||||||| |||| || ||| |
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|
| T |
33257093 |
accactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttccaaaggagacaaaaataacagaacttggtggctga |
33256994 |
T |
|
| Q |
138 |
ttctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctcttttt |
237 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||| ||||| ||| |||||||||||||| || ||||| || ||| |||||| |||||||||| | | |
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| T |
33256993 |
ttttccaaccaccttaaacacactga---catgtttgcttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctctgt |
33256897 |
T |
|
| Q |
238 |
cttgaagaaccctta |
252 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
33256896 |
cttgaagtaccctta |
33256882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 252
Target Start/End: Complemental strand, 1211 - 1000
Alignment:
| Q |
38 |
accactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaacatacataaagaacagaatttggaggttga |
137 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||| || ||||| | |||||||||||| ||||| | ||| ||| ||||||| |||| || ||| |
|
|
| T |
1211 |
accactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccacttccaaaggagacaaaaataacagaacttggtggctga |
1112 |
T |
|
| Q |
138 |
ttctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctaataatgggtcccactggataaacacaaggtttctcttttt |
237 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||| ||||| ||| |||||||||||||| || ||||| || ||| |||||| |||||||||| | | |
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|
| T |
1111 |
ttttccaaccaccttaaacacactga---catgtttgcttcattatttgactcatttctaatgataggtccaaccggaaaaacactaggtttctctctgt |
1015 |
T |
|
| Q |
238 |
cttgaagaaccctta |
252 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
1014 |
cttgaagtaccctta |
1000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 16490748 - 16490675
Alignment:
| Q |
34 |
ttttaccactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaa |
107 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||| ||| || || |||| |||||||||||| |||||| |
|
|
| T |
16490748 |
ttttaccactcaattctaacccataagctaactcattcacttgctcttgtgaaagtgttccaccacttccaaaa |
16490675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 11865 - 11933
Alignment:
| Q |
38 |
accactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaa |
106 |
Q |
| |
|
|||||| ||||| || ||||| ||||||||||| | |||||| ||||||| |||||||||||| ||||| |
|
|
| T |
11865 |
accacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaa |
11933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 60979 - 60911
Alignment:
| Q |
38 |
accactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaa |
106 |
Q |
| |
|
|||||| ||||| || ||||| ||||||||||| | |||||| ||||||| |||||||||||| ||||| |
|
|
| T |
60979 |
accacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaa |
60911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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