View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_high_47 (Length: 382)

Name: NF16554_high_47
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_high_47
NF16554_high_47
[»] chr2 (2 HSPs)
chr2 (32-231)||(15148817-15149004)
chr2 (263-327)||(15150422-15150486)
[»] chr5 (1 HSPs)
chr5 (23-64)||(21835963-21836004)
[»] chr4 (1 HSPs)
chr4 (23-64)||(16914364-16914405)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 32 - 231
Target Start/End: Original strand, 15148817 - 15149004
Alignment:
Q  32 agtggagacggaaatttgttatttggagacggaatttagagacaaaattctctgtgaatgaattcttcaatgatcattgtctgtctcaaaatccgtctct 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||| |||||| ||||||||||||    
T  15148817 agtggagacggaaatttgttatttggagacggaatttagagacaaaattctctgt------------caatgatcattgtttgtctctaaatccgtctct 15148904  T
Q  132 aataaaatactttgttgtttagagaccaaatctagagatagaaacctagttgttcgactcaaattttgtctctgtaaacatccgtctctaaatccatctc 231  Q
    ||| | ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15148905 aatgagatactttgttgtttagagatcgaatctagagatagaaacctaattgttcgactcaaattttgtctctgtaaacatccgtctctaaatccatctc 15149004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 15150422 - 15150486
Alignment:
Q  263 tagggaagaaagaatcaccttgnnnnnnngaatcatgagagtgaaagaaacaattttgtatgatt 327  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  15150422 tagggaagaaagaatcaccttgaaaaaaagaatcatgagagtgaaagaaacaattttgtatgatt 15150486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 21835963 - 21836004
Alignment:
Q  23 agagacggaagtggagacggaaatttgttatttggagacgga 64  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  21835963 agagacggaagttgagacggaaatttgtaatttggagacgga 21836004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 16914364 - 16914405
Alignment:
Q  23 agagacggaagtggagacggaaatttgttatttggagacgga 64  Q
    |||||||||||| |||||||||| |||| |||||||||||||    
T  16914364 agagacggaagttgagacggaaagttgtaatttggagacgga 16914405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University