View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_51 (Length: 370)
Name: NF16554_high_51
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 49123269 - 49123539
Alignment:
| Q |
15 |
tcatatagatcaaatctgagcgtgtaagattgtatcatgcatgttacccataacatagtcagtttagaaaatgtatatggcaggtgtatgaccaagataa |
114 |
Q |
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| T |
49123269 |
tcatatagatcaaatctcagcgtgtaagattgtatcatgcatgttacccataacatagtcagtttagaaaatgtatatggcaggtgtatgaccaagataa |
49123368 |
T |
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| Q |
115 |
ggacaaaaatgtacatataatttattttcaaaattaaaaccaccctaagttcatgacgtaattgaattcaatgagggggtccaattgaaactatatctaa |
214 |
Q |
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| T |
49123369 |
ggacaaaaatgtacatataatttattttcaaaattaaaaccaccctaagttcatgacgtaattgaattcaatgagggggtccaattgaaacaatatctaa |
49123468 |
T |
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| Q |
215 |
gatatgattgttttgaaagcttagcaagtagcaacatgtcaaaccaatgcatatgcggtgaaataatatta |
285 |
Q |
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| T |
49123469 |
gatatgattgttttgaaagcttagcaagtagcaacatgtcaaaccaatgcatatgcggtgaaataatatta |
49123539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 284 - 368
Target Start/End: Original strand, 49123778 - 49123862
Alignment:
| Q |
284 |
taataacaagtttagttggcattaccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgttcttct |
368 |
Q |
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| T |
49123778 |
taataacaagtttagttggcattaccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgttcttct |
49123862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 4271743 - 4271681
Alignment:
| Q |
306 |
taccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgttcttct |
368 |
Q |
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| T |
4271743 |
taccatctaaaagatactctggggcaacataccccaatgtgcctgaaagcttgatgttattct |
4271681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 2808087 - 2808025
Alignment:
| Q |
306 |
taccatctaaaagatattctggggctacgtatcccaatgttcctgaaaccttgatgttcttct |
368 |
Q |
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| T |
2808087 |
taccatctaaaagatactccggggcaacataccccaatgtgcctgaaagcttgatgttattct |
2808025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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