View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_56 (Length: 359)
Name: NF16554_high_56
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 19172362 - 19172701
Alignment:
| Q |
18 |
gaacgagcaagattggtgaagatgaaaggatggaggtcagagatccaaagaagaggcttttctaaggagttatgccagtcttggttgaggatttgagaag |
117 |
Q |
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| T |
19172362 |
gaacgagcaagattggtgaagatgaaaggatggaggtcagagatccaaagaagaggcttttctaaggagttatgccagtcttggttgaggatttgagaag |
19172461 |
T |
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| Q |
118 |
ggtctgtggttgcagctgcgtcgagggtgtggtagtaagattggaagtgttggtggatgagctcaacgtgagttgagaggagggttaaggaggcgccgga |
217 |
Q |
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| T |
19172462 |
ggtctgtgattgcagctgcgtcgagggtgtggtagtaagattggaagtgttggtggatgagctcaacgtgagttgagaggagggttaaggagtcgccgga |
19172561 |
T |
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| Q |
218 |
gatagaacgacggagtaatgggaggtgattgttcttgagtgtgttgaaccattctgtgtagtattctttgaatggacgcgacgtcgatgatgaagatgat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172562 |
gatagaacgacggagtaatgggaggtgattgttcttgagtgtgttgaaccattctgtgtagtattctttgaatggacgcgacgtcgatgatgaagatgat |
19172661 |
T |
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| Q |
318 |
gatgtgtgttgtttctgtctgttgaatactgatttcaaca |
357 |
Q |
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| T |
19172662 |
gatgtgtgttgtttctgtctgttgaatactgatttcaaca |
19172701 |
T |
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