View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_high_57 (Length: 358)
Name: NF16554_high_57
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_57 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 15148327 - 15148653
Alignment:
| Q |
13 |
aatatggtgcaatcggtcttactcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15148327 |
aatatggtgcaatcggtcttactcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaag |
15148426 |
T |
|
| Q |
113 |
atatttttaagagttaccgcatccttaagtaatgattttttatgacgtaggaaagattatgaactagggattgttcattgtaatgatgaacaacatgact |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15148427 |
atatttttaagagttaccacatccttaagtaatgattttttatgacgtaggaaagattatgaactagggattgttcattgtaatgatgaacaacatgact |
15148526 |
T |
|
| Q |
213 |
acaagacgttttaattaattgcatattttcagaactaaaacaaatcatcaaccttgaagagcaatagcatattctaactaaatactttggaaacacaaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15148527 |
acaagacgttttaattaattgcatattttcagaactaaaacaaatcatcaaccttgaagagcaatagcatattctaactaaatactttggaaacacagat |
15148626 |
T |
|
| Q |
313 |
caccttaagattcacaagtccctacaa |
339 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15148627 |
caccttaagattcacaagtccctacaa |
15148653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 43471332 - 43471164
Alignment:
| Q |
35 |
tcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaagatatttttaagagttaccgcat |
134 |
Q |
| |
|
||||||||||||||||||||| |||||| || ||| |||||||| |||| | || || ||||||||| ||||| |||||||||||||||||| | | |
|
|
| T |
43471332 |
tcttaccaacatagaaaccatgataatagtgagttatgttggtaagacacatcatttgttcttgcaagaggacaaataatatttttaagagttacctctt |
43471233 |
T |
|
| Q |
135 |
ccttaagtaatgattttttatgacgtaggaaagattatgaactagggattgttcattgtaatgatgaac |
203 |
Q |
| |
|
||||| |||||||||| || | | ||| ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
43471232 |
ccttagacaatgatttttcatagcattaaaaaaattatgaactaggaattgttcatcgtaatgatgaac |
43471164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 48443816 - 48443977
Alignment:
| Q |
35 |
tcttaccaacatagaaaccataataataaggatatattttggtaaggcacacccatttttattgcaagagaacaaaagatatttttaagagttaccgcat |
134 |
Q |
| |
|
|||||| |||||||||| ||| | ||||| || ||| ||||||||||| || | || || |||||||| | ||||||||||||||||||||||| ||| |
|
|
| T |
48443816 |
tcttacgaacatagaaatcatgagaataacgagttatgttggtaaggcaaactctttgttcttgcaagatgataaaagatatttttaagagttacctcat |
48443915 |
T |
|
| Q |
135 |
ccttaagtaatgattttttatgacgt-aggaaagattatgaactagggattgttcattgtaat |
196 |
Q |
| |
|
||||| | ||| ||||| || || | || ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
48443916 |
ccttaggcaataattttacataacataagaaaagattatgaacta-ggattattcattgtaat |
48443977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University