View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_high_62 (Length: 347)
Name: NF16554_high_62
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_62 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 330
Target Start/End: Complemental strand, 42186406 - 42186104
Alignment:
| Q |
21 |
ttgtcaacaacaaaaaagagtgcattgtggttgcttattggtcggatgaatggacatcaat-taaccttacacgtgagtgtaatgtaacagtattgaact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||| |
|
|
| T |
42186406 |
ttgtcaacaacaaaaaagagtgcattgttgttgcttattggtcggatgaatggacatcaaccttacactacacatgagtgtaatgtaacagtattgaact |
42186307 |
T |
|
| Q |
120 |
tgatctttcatttagatcatatgataacttttgctgcttccttcttccccgacttcaagataaagaatatcatgtgccaaaacattttgttaatgtgtct |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42186306 |
tgatctttcatttagatca--------cttttgctgcttccttcttccccgacttcaagataaagaatatcatgtgccaaaagattttgttaatgtgtct |
42186215 |
T |
|
| Q |
220 |
tgccaaggagacaagataatatttcacatgttctactatatatatgaaaatgattgatcctccagtatacaatttgacataacatggacataactgaaac |
319 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42186214 |
ttccaaggagacaagataatatttcacatgttctactatatatatgaaaatgattgatcctccagtatacaatttgacataacatggacataactgaaac |
42186115 |
T |
|
| Q |
320 |
cccaccacctc |
330 |
Q |
| |
|
||||||||||| |
|
|
| T |
42186114 |
cccaccacctc |
42186104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University