View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_63 (Length: 345)
Name: NF16554_high_63
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 39577891 - 39577567
Alignment:
| Q |
17 |
caagcatcttatgattaatattagaaaattgaaggcaattgaaggcattggttcaattaagaagaaataacactttcatatatcacgctgtgatgcaata |
116 |
Q |
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| T |
39577891 |
caagcatcttatgattaatattagaaaattgaaggcaattgaaggcattggttcaattaagaagaaataacactttcatatatcacgctgtgatgcaata |
39577792 |
T |
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| Q |
117 |
aataaaatggaacttaatgtttaccttttcttaagcaacacaaagcttcctatctgaatctcttatccaaacagtagtgtgaccagaatacagtaacttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39577791 |
aataaaatggaacttaatgtttaccttttcttaagcaacacaaagcttcctatctgaatctcttatccaaacagtagtatgaccagaatacagtaacttc |
39577692 |
T |
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| Q |
217 |
atcgcacatgcaagaatttcttggttgttcgaatttctggctcttgctcgcaagaaattatatttgtacaatcattttagaacaaccctctcacactcat |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39577691 |
atcgcacatgcaagaatttcttggtcgttcgaatttctcgctcttgctcgcaagaaattatatttgtacaatcattttagaacaaccctctcacactcat |
39577592 |
T |
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| Q |
317 |
cttatgttcttacttcttctctctc |
341 |
Q |
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| T |
39577591 |
cttatgttcttactccttctctctc |
39577567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 39541720 - 39541666
Alignment:
| Q |
136 |
tttaccttttcttaagcaacacaaagcttcctatctgaatctcttatccaaacag |
190 |
Q |
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| T |
39541720 |
tttaccttttcataagcaacacagagcttcctatctgaatctcttaagcaaacag |
39541666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 84
Target Start/End: Complemental strand, 39541778 - 39541747
Alignment:
| Q |
53 |
aattgaaggcattggttcaattaagaagaaat |
84 |
Q |
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| T |
39541778 |
aattgaaggcattggttcaattaagaagaaat |
39541747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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