View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_69 (Length: 325)
Name: NF16554_high_69
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_69 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 5987196 - 5986891
Alignment:
| Q |
18 |
tacatgactatgactatgctttctcaagaatttagggtgtcaacaggttgtgagtttccaagttttataccaatatatttttagtattaacttcatcaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
5987196 |
tacatgactatgactatgctttctcaagaatttagggtgtcaacaggttgtgagtttccaagttttataccaatatatttttaatgttaacttcatcaaa |
5987097 |
T |
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| Q |
118 |
aaagttattctcatagcttcaccttataatttttcaagttttataccaatcaactttgttgaaaactaatacagacattagtcctaccacctgcatgtgt |
217 |
Q |
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| T |
5987096 |
aatgtcattatcataatttcaccttataatttttcaagttttataccaatcaactttgttgaaaactaatacagacattagtcctaccacctgcatgtgt |
5986997 |
T |
|
| Q |
218 |
gtgacacgtatcgccactacagcagctccaacaagcaatga----tagcataccaatatactaagagaatctaatatacaatttcatattggataagaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5986996 |
gtgacacgtatcgccactacagcagctccaacaagcaatgatagctagcataccaatatactaagagaatctaatatacaatttcatattggataagaat |
5986897 |
T |
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| Q |
314 |
aattta |
319 |
Q |
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| T |
5986896 |
agttta |
5986891 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 699203 - 699149
Alignment:
| Q |
99 |
tagtattaacttcatcaaaaaagttattctcatagcttcaccttataatttttca |
153 |
Q |
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| T |
699203 |
tagtgttaacttcatcagaaaagtcattctcataacttcaccataaaatttttca |
699149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 36493846 - 36493900
Alignment:
| Q |
99 |
tagtattaacttcatcaaaaaagttattctcatagcttcaccttataatttttca |
153 |
Q |
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| T |
36493846 |
tagtattaacttcaccaaaaaagttattttcatgacttcaccatagaatttttca |
36493900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 50764786 - 50764753
Alignment:
| Q |
98 |
ttagtattaacttcatcaaaaaagttattctcat |
131 |
Q |
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| T |
50764786 |
ttagtgttaacttcatcaaaaaagttattctcat |
50764753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 7940 - 7887
Alignment:
| Q |
99 |
tagtattaacttcatcaaaaaagttattctcatagcttcaccttataatttttc |
152 |
Q |
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| T |
7940 |
tagtgttaacttcatcaaaaaagtcattcttataacttcaccatagaatttttc |
7887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 41926212 - 41926159
Alignment:
| Q |
99 |
tagtattaacttcatcaaaaaagttattctcatagcttcaccttataatttttc |
152 |
Q |
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| T |
41926212 |
tagtattaacttcatcaaaaaaatcattttcataacttcaccatagaatttttc |
41926159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 31861945 - 31861897
Alignment:
| Q |
102 |
tattaacttcatcaaaaaagttattctcatagcttcaccttataatttt |
150 |
Q |
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| T |
31861945 |
tattaacttcaccaaaaaagtcattctcataacttcaccatagaatttt |
31861897 |
T |
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