View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_73 (Length: 316)
Name: NF16554_high_73
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_73 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 127 - 308
Target Start/End: Complemental strand, 5516 - 5335
Alignment:
| Q |
127 |
tcacatgagaacagtaaaaattacagagagaaaatcttctttgctaaattacttggtttactaaataacttgagcaacttttttaattgattcccttttc |
226 |
Q |
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| T |
5516 |
tcacatgagaacagtaaaaattacagagagaaaatcttctttgctaaattacttggtttactaaataacttgagcaacttttttaattgattcccttttc |
5417 |
T |
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| Q |
227 |
aagcaagttgtacctgtaaaacttcctcagagtaacaccaatggtttgattcttcaaataataacgcaagatttcctttgct |
308 |
Q |
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| T |
5416 |
aagcaagttgtacttgtaaaacttcctcagagtaacaccaatggtttgattcttcaaataataatgcaagatttcctttgct |
5335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 308
Target Start/End: Original strand, 11796 - 11959
Alignment:
| Q |
144 |
aaattacagagagaaaatcttctttgctaaattacttggtttactaaataacttgagcaacttttttaattgattcccttttcaagcaagttgtacctgt |
243 |
Q |
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| T |
11796 |
aaattactgagagaaaattttctttgtttaattacttggtttactaaagaacttgatcaacttgtttaattgatccccttttcaaacaagttgcactttt |
11895 |
T |
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| Q |
244 |
aaaacttcctcagagtaacaccaatggtttgattcttcaaataataacgcaagatttcctttgct |
308 |
Q |
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| T |
11896 |
gaatttttgtcaaagtaacaccaat-gtttgattcttcaaataataatgcattatttcctttgct |
11959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 308
Target Start/End: Original strand, 22124 - 22287
Alignment:
| Q |
144 |
aaattacagagagaaaatcttctttgctaaattacttggtttactaaataacttgagcaacttttttaattgattcccttttcaagcaagttgtacctgt |
243 |
Q |
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| T |
22124 |
aaattactgagagaaaattttctttgtttaattacttggtttactaaagaacttgatcaacttgtttaattgatccccttttcaaacaagttgcactttt |
22223 |
T |
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| Q |
244 |
aaaacttcctcagagtaacaccaatggtttgattcttcaaataataacgcaagatttcctttgct |
308 |
Q |
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| T |
22224 |
gaatttttgtcaaagtaacaccaat-gtttgattcttcaaataataatgcattatttcctttgct |
22287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 5598 - 5533
Alignment:
| Q |
17 |
agctacaagtctacaaattaccccatttggatnnnnnnnnnnnttaaatgtatgtctattcgtttg |
82 |
Q |
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| T |
5598 |
agctacaagtctacaaattaccccatttggataaaaaaaaaaattaaatgtatgtctattcgtttg |
5533 |
T |
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