View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_high_76 (Length: 304)

Name: NF16554_high_76
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_high_76
NF16554_high_76
[»] chr2 (2 HSPs)
chr2 (19-302)||(44439870-44440151)
chr2 (161-290)||(4653267-4653396)
[»] chr3 (2 HSPs)
chr3 (161-290)||(7321116-7321245)
chr3 (244-276)||(10877611-10877643)
[»] chr1 (4 HSPs)
chr1 (161-296)||(2887141-2887276)
chr1 (207-296)||(7384148-7384236)
chr1 (154-260)||(26479147-26479254)
chr1 (194-296)||(16824508-16824610)
[»] chr7 (3 HSPs)
chr7 (161-276)||(5464984-5465099)
chr7 (161-296)||(25828802-25828937)
chr7 (161-276)||(12501562-12501677)
[»] chr4 (4 HSPs)
chr4 (161-289)||(47924684-47924812)
chr4 (161-276)||(41940963-41941078)
chr4 (161-296)||(54258958-54259093)
chr4 (207-273)||(25969140-25969206)
[»] chr6 (2 HSPs)
chr6 (206-276)||(2442091-2442161)
chr6 (161-296)||(29046838-29046973)
[»] chr8 (2 HSPs)
chr8 (161-296)||(1759011-1759146)
chr8 (210-293)||(23589575-23589658)
[»] chr5 (1 HSPs)
chr5 (181-251)||(12292389-12292459)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 44439870 - 44440151
Alignment:
Q  19 cgattccctttaaaagaatggtcgccatggaagcccttcggatgtgaggaatgagttttcacaacgcagacaacttcgaactaaggtgtttatatctctc 118  Q
    |||||||||| ||||||||||| ||||||||||| |||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  44439870 cgattcccttgaaaagaatggttgccatggaagcacttctgatgtgaggaatg---tttcacaacgcagacaacttcgaactaaggtgtttatatctctc 44439966  T
Q  119 t--tctggttttgggtataaaaggtatttcctctattttttgtttgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggt 216  Q
    |  |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44439967 tcttctggtttagggtataaaaggtatttcctctatttt-tgtttgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggt 44440065  T
Q  217 gcgaaatacatttttattatatgataaatgcattttttactatctcaatcttggtttggatcaatactcatcgcgcctctctgctc 302  Q
    |||||| ||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||| ||| |||||| |||| |||||    
T  44440066 gcgaaagacatttttattttatgatgaatgtattttttactatctcaatattggtttggatcaacacttatcgcgtctctttgctc 44440151  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 4653267 - 4653396
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| ||||||||||| || |||| ||||| ||||||| |  ||| |||||||||||||||| |||||||| ||| || || ||||||||| ||||||||    
T  4653267 tgttggagaaacaatactatttttgaggatcaacattggcgtattcaagatgtggtgcgaaagacatttttgttacataatgaatgcatttcttactatc 4653366  T
Q  261 tcaatcttggtttggatcaatactcatcgc 290  Q
     ||||| ||||||||| | | |||||||||    
T  4653367 ccaatcatggtttggacccacactcatcgc 4653396  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 7321116 - 7321245
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| ||||||||||| || |||||||||| ||||| | |||| | |||||||| ||||||| || ||||| | | ||||| ||||||||||||||||||    
T  7321116 tgttggagaaacaatactaatttttaggatcaacatcggcacagtcaagatgtgatgcgaaagacctttttgtcacatgatgaatgcattttttactatc 7321215  T
Q  261 tcaatcttggtttggatcaatactcatcgc 290  Q
    |||||||||||||||| | |||| ||||||    
T  7321216 tcaatcttggtttggacccatacacatcgc 7321245  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Original strand, 10877611 - 10877643
Alignment:
Q  244 atgcattttttactatctcaatcttggtttgga 276  Q
    |||||||| ||||||||||||||||||||||||    
T  10877611 atgcatttcttactatctcaatcttggtttgga 10877643  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 2887141 - 2887276
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| ||||||||||| || ||| |||||| ||||||| |  ||| |||||||||||||||| || ||||| |||  |||| ||||||||||||||||||    
T  2887141 tgttggagaaacaatactattttgtaggatcaacattggcgtattcaagatgtggtgcgaaagacctttttgttacgtgatgaatgcattttttactatc 2887240  T
Q  261 tcaatcttggtttggatcaatactcatcgcgcctct 296  Q
     ||||||||||||||| | | |||||| ||||||||    
T  2887241 ccaatcttggtttggacccacactcatggcgcctct 2887276  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 7384148 - 7384236
Alignment:
Q  207 aagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatctcaatcttggtttggatcaatactcatcgcgcctct 296  Q
    |||||||||||||||| || ||||| ||||||||| ||||||||| ||| |||||||||| | ||||||| | | |||||||||| ||||    
T  7384148 aagatgtggtgcgaaagacttttttgttatatgatgaatgcatttcttattatctcaatcat-gtttggacccacactcatcgcgtctct 7384236  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 26479147 - 26479254
Alignment:
Q  154 ttttgtttgtta-gagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcatttt 252  Q
    |||||||||||| |||||||||| ||| |||| ||||| |||||||    |||||||||||||||| |||||  ||||| ||| ||||| |||| ||||     
T  26479147 ttttgtttgttacgagaaacaatgttatttttgaggatcaacattggtgtatttaagatgtggtgcaaaatatttttttgttacatgatgaatgtatttg 26479246  T
Q  253 ttactatc 260  Q
    ||||||||    
T  26479247 ttactatc 26479254  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 16824610 - 16824508
Alignment:
Q  194 cattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatctcaatcttggtttggatcaatactcatcgcgcc 293  Q
    |||||||  ||| ||||||||||| |||| || ||||| ||| ||||| ||||||||| ||||||||  ||||||| |||||| | | |||||||| |||    
T  16824610 cattgacgtattcaagatgtggtgtgaaagacctttttgttacatgatgaatgcatttcttactatcctaatcttgatttggaaccacactcatcgtgcc 16824511  T
Q  294 tct 296  Q
    |||    
T  16824510 tct 16824508  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 5465099 - 5464984
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| ||||||||||| || |||||||||| ||||||| |  ||| |||||||||||||||| |  ||||||||| ||||| ||||||||| ||||||||    
T  5465099 tgttggagaaacaatactattttttaggatcaacattggcgtattcaagatgtggtgcgaaagatctttttattacatgatgaatgcatttattactatc 5465000  T
Q  261 tcaatcttggtttgga 276  Q
     |||||| ||||||||    
T  5464999 ccaatctcggtttgga 5464984  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 25828937 - 25828802
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| ||||||||||| || |||||||||| ||||||| |  ||  |||||||||||||||| || ||||| ||| ||||| |||| |||| |||||||     
T  25828937 tgttggagaaacaatactattttttaggatcaacattgtcgtatccaagatgtggtgcgaaagacctttttgttacatgatgaatgtatttcttactatg 25828838  T
Q  261 tcaatcttggtttggatcaatactcatcgcgcctct 296  Q
     ||||| | ||||| | | | |||||||||||||||    
T  25828837 acaatccttgtttgtacccacactcatcgcgcctct 25828802  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 12501562 - 12501677
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| |||||||||| ||| ||||  |||| | ||||| |  ||| |||||||||||||||| || ||||  ||| ||||| ||||||||| ||||||||    
T  12501562 tgttggagaaacaatgttatttttgtggatcaccattggcgtattcaagatgtggtgcgaaagactttttcgttaaatgatgaatgcatttcttactatc 12501661  T
Q  261 tcaatcttggtttgga 276  Q
     ||||| |||||||||    
T  12501662 ccaatcctggtttgga 12501677  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 289
Target Start/End: Complemental strand, 47924812 - 47924684
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| ||||||||| | || |||||||||| ||||||| |  ||| | ||||| |||||||| || ||||| ||| ||||| ||||||||| ||||||||    
T  47924812 tgttggagaaacaacactattttttaggatcaacattggcgtattcaggatgtagtgcgaaagacttttttgttagatgatgaatgcatttcttactatc 47924713  T
Q  261 tcaatcttggtttggatcaatactcatcg 289  Q
     ||||||||||||||| | | ||||||||    
T  47924712 ccaatcttggtttggacccacactcatcg 47924684  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 41941078 - 41940963
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| ||||||||||| || |||||| | | |||||||    ||| |||||||||||||||| |  ||||| ||| ||||| ||||||||| ||||||||    
T  41941078 tgttggagaaacaatactattttttatggtcaacattggtgtattcaagatgtggtgcgaaagatctttttgttacatgatgaatgcatttcttactatc 41940979  T
Q  261 tcaatcttggtttgga 276  Q
     |||||||||||||||    
T  41940978 ccaatcttggtttgga 41940963  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 54258958 - 54259093
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| ||||||||||| || |||| ||||| |||||||    ||| |||||||||||||||| |  ||||| ||| ||||| |||||||||  |||||||    
T  54258958 tgttggagaaacaatactatttttgaggatcaacattggtgtattcaagatgtggtgcgaaagatctttttgttacatgatgaatgcatttcgtactatc 54259057  T
Q  261 tcaatcttggtttggatcaatactcatcgcgcctct 296  Q
     ||||||||||| ||| | |  ||||||||||||||    
T  54259058 ccaatcttggttcggacccactctcatcgcgcctct 54259093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 25969140 - 25969206
Alignment:
Q  207 aagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatctcaatcttggttt 273  Q
    ||||||||||| |||| ||  |||||||| |||||  || ||||||||||||||||| |||||||||    
T  25969140 aagatgtggtgtgaaagaccattttattacatgatgtatacattttttactatctcagtcttggttt 25969206  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 2442091 - 2442161
Alignment:
Q  206 taagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatctcaatcttggtttgga 276  Q
    ||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||| |||| ||| ||||||    
T  2442091 taagatgtggtgcgaaagacatttttgttacatgatgaatgcattttttactatcccaatattgatttgga 2442161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 29046838 - 29046973
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| |||||||||||||| |||| ||||  ||| ||| |  ||| ||||||||||| |||| || ||||| ||| ||||| |||||| || |||| ||     
T  29046838 tgttggagaaacaatattatttttgaggaacaacgttggcgtattcaagatgtggtgtgaaagacctttttgttacatgatgaatgcacttcttacgatt 29046937  T
Q  261 tcaatcttggtttggatcaatactcatcgcgcctct 296  Q
     ||||||||||||||| | | ||||||| |||||||    
T  29046938 ccaatcttggtttggacccacactcatcacgcctct 29046973  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 1759146 - 1759011
Alignment:
Q  161 tgttagagaaacaatattactttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattttttactatc 260  Q
    |||| ||||||||||| || ||||  |||| |||||||    ||| ||||||||||| |||| || |||||  || ||||| ||||||||| |||||||     
T  1759146 tgttggagaaacaatactatttttgtggatcaacattggtgtattcaagatgtggtgtgaaagacctttttgctacatgatgaatgcatttcttactatt 1759047  T
Q  261 tcaatcttggtttggatcaatactcatcgcgcctct 296  Q
     ||||||||||||||| | ||||||||| |||||||    
T  1759046 ccaatcttggtttggacccatactcatcacgcctct 1759011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 23589575 - 23589658
Alignment:
Q  210 atgtggtgcgaaatacatttttattatatgataaatgcattttttactatctcaatcttggtttggatcaatactcatcgcgcc 293  Q
    ||||||||||||| || ||||| ||| ||||| ||||||||| |||| ||| ||||| ||||||||| | | ||||||||||||    
T  23589575 atgtggtgcgaaagacttttttgttacatgatgaatgcatttcttaccatcccaatcctggtttggacccacactcatcgcgcc 23589658  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 12292459 - 12292389
Alignment:
Q  181 tttttaggattaacattgacacatttaagatgtggtgcgaaatacatttttattatatgataaatgcattt 251  Q
    |||||||||| ||||||| |  ||| |||||||||||||||| | |||||| ||| ||||| |||||||||    
T  12292459 tttttaggatcaacattggcgtattcaagatgtggtgcgaaagagatttttgttacatgatgaatgcattt 12292389  T

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