View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_high_77 (Length: 300)
Name: NF16554_high_77
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_77 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 60 - 282
Target Start/End: Complemental strand, 30415015 - 30414791
Alignment:
| Q |
60 |
gatttattgcccagtgatcattcacaaaatcaattagatccttctcttaaagacaaagcttatgcggatgaaggttagttttataaacatgatcaattat |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
30415015 |
gatttattgcccagtgatcattcacaaaatcaattagatccttctcttaaagacaaagcttatgctgatgaaagttagttttataaacatgatcaattat |
30414916 |
T |
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| Q |
160 |
tgttagtgtttgtttttctaatgtgaacttgaacacaaaaataatgtaaacataaattttattaacca--atatgttttcatacggctgactataaaatg |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
30414915 |
tgttagtgtttgtttttctaatgtgaacttgaacacaaaaataatgtaaacataaattttgttaaccaatatatgttttcatacggctgactataaaatg |
30414816 |
T |
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| Q |
258 |
gtgtgcaacatatgctcggttcttt |
282 |
Q |
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| T |
30414815 |
gtgtgcaacatatgctcggttcttt |
30414791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 30439915 - 30439799
Alignment:
| Q |
127 |
atgaaggttagttttataaacatgatcaattattgttagtgtttgttt-ttctaatgtgaacttgaacacaaaaataatgtaaacataaattttattaac |
225 |
Q |
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| T |
30439915 |
atgaaggttagcttcatacatacgaccaattattgttagtgtttgtttcttgtaatgtgaatttgaacgcaaaaataatgtaaacataaatttcattaac |
30439816 |
T |
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| Q |
226 |
caatatgttttcatacg |
242 |
Q |
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| T |
30439815 |
atatatgttttcatacg |
30439799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 30429070 - 30428917
Alignment:
| Q |
87 |
aatcaattagatccttctcttaaagacaaagcttatgcggatgaaggttagttttataaacatgatcaattattgttagtgtttgttt-ttctaatgtga |
185 |
Q |
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||||||| ||||| |||||||||| ||||||| | | || || |||||| |||||||| | |||||||||| ||||||||||||| || || |||| |
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| T |
30429070 |
aatcaatcagatctttctcttaaaaacaaagcctctcgtgaggatggttagctttataaataaaatcaattattattagtgtttgtttcttgta--gtga |
30428973 |
T |
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| Q |
186 |
acttgaacacaaaaataatgtaaacataaattttattaaccaatatgttttcatacg |
242 |
Q |
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| T |
30428972 |
atttgagcacaaaaataatgtaaacataaa-ttcattaactgatatgtttacatacg |
30428917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 30440366 - 30440297
Alignment:
| Q |
150 |
gatcaattattgttagtgtttgttt-ttctaatgtgaacttgaacacaaaaataatgtaaacataaattt |
218 |
Q |
| |
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|||||||| |||||||||||||||| || ||| ||||| || |||||||||||||||||||||||||||| |
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| T |
30440366 |
gatcaatttttgttagtgtttgtttcttataacgtgaagtttaacacaaaaataatgtaaacataaattt |
30440297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 30431917 - 30431766
Alignment:
| Q |
101 |
ttctcttaaagacaaagcttatgcggatgaaggttagttttataaacatgatcaattattgttagtgttt-gttt-ttctaatgtgaacttgaacacaaa |
198 |
Q |
| |
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|||||||||||| || | || ||| |||||||||||| |||| || | |||||| ||||| |||||| |||| || |||| |||| ||||||||||| |
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| T |
30431917 |
ttctcttaaagataatgtttctgctgatgaaggttagcgttattaa---gttcaatttttgttcgtgttttgtttcttataatatgaatttgaacacaaa |
30431821 |
T |
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| Q |
199 |
aataatgtaaacataaattttattaaccaatatgttttcatacggctgactataa |
253 |
Q |
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|||||| ||||||||||||| |||||| ||| ||||||||||| ||||||||| |
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| T |
30431820 |
aataatttaaacataaatttcattaacatataagttttcatacgattgactataa |
30431766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 30415801 - 30415706
Alignment:
| Q |
65 |
attgcccagtgatcattcacaaaatcaattagatccttctcttaaagacaaagcttatgcggatgaaggttagttttataaacatgatcaattatt |
160 |
Q |
| |
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||||||||||||| || || ||||||||| ||||||||| || ||||||||| || || |||||||||||| |||||||| | ||||||||||| |
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| T |
30415801 |
attgcccagtgataatgcataaaatcaatcggatccttctattcaagacaaagtttttgatgatgaaggttagctttataaatacgatcaattatt |
30415706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 30430437 - 30430267
Alignment:
| Q |
94 |
tagatccttctcttaaagacaaagcttatgcggatgaaggttagttttataaacatgatcaattattgttagtgttt-gttt-ttctaatgtgaacttga |
191 |
Q |
| |
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|||||| ||||||||||| ||||| ||||| |||||||||||| |||||| |||||||| || || |||||| |||| || ||||||||| |||| |
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| T |
30430437 |
tagatctttctcttaaaggcaaagtttatgtcgatgaaggttagctttatatgtc-gatcaatttttatttgtgttttgtttcttataatgtgaatttga |
30430339 |
T |
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| Q |
192 |
acacaaaa-ataatgtaaacataaattttattaaccaatatgttttcatacggctgactataaaatggtgtg |
262 |
Q |
| |
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|||| ||| |||| ||| |||||||||| |||||| ||||||||||| ||| ||||||||| |||||||| |
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| T |
30430338 |
acaccaaatataaagtatacataaatttcattaacatatatgttttcacacgattgactataacatggtgtg |
30430267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 30447502 - 30447419
Alignment:
| Q |
159 |
ttgttagtgttt-gttt-ttctaatgtgaacttgaacacaaaaataatgtaaacataaattttattaaccaatatgttttcata |
240 |
Q |
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|||||||||||| |||| || ||||||||| |||||||||||||||||||||| |||||||| |||||| | ||||||||||| |
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| T |
30447502 |
ttgttagtgttttgtttcttataatgtgaatttgaacacaaaaataatgtaaatataaatttcattaacatacatgttttcata |
30447419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 262
Target Start/End: Complemental strand, 30431407 - 30431242
Alignment:
| Q |
103 |
ctcttaaagacaaagcttatgcggatgaaggttagttttataaacatgatcaattattgttagtgtttgtttttcta--atgtgaacttgaacacaaaaa |
200 |
Q |
| |
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|||| ||||| |||| ||||| |||||||||||| ||||| || ||||||| |||||||||||| ||||||| || |||| ||||||| ||||| |
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| T |
30431407 |
ctctaaaagataaagtttatgttgatgaaggttagctttattaaatctatcaatttttgttagtgttttgttttctataatatgaatttgaacataaaaa |
30431308 |
T |
|
| Q |
201 |
taatgtaaaca----taaattttattaaccaatatgttttcatacggctgactataaaatggtgtg |
262 |
Q |
| |
|
||||||||||| |||||||| ||||| ||| ||||||||||| | ||||||| |||||||| |
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| T |
30431307 |
taatgtaaacatatttaaattttgttaactgataagttttcatacgattaactataatatggtgtg |
30431242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 30419069 - 30418914
Alignment:
| Q |
85 |
aaaatcaattagatccttctcttaaagacaaagcttatgcggatgaaggttagttttataaacatgatcaattattgttagtgtttgtttttctaatgtg |
184 |
Q |
| |
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||||||||| ||||||||| || ||||||||| || | ||||||||||| |||||||| | ||||| | |||||||| ||||||| || |||||| |
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| T |
30419069 |
aaaatcaatcggatccttctattcaagacaaagttttttataatgaaggttagctttataaatacgatcagtaattgttagcgtttgttcttgtaatgta |
30418970 |
T |
|
| Q |
185 |
aacttgaaca-caaaaataatgtaaacataaattttattaaccaatatgttttcat |
239 |
Q |
| |
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| ||||| | ||||| ||||||||||||||||| ||||| |||||||||||| |
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| T |
30418969 |
gatttgaaaagaaaaaaaaatgtaaacataaatttcattaagagatatgttttcat |
30418914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 30447109 - 30447059
Alignment:
| Q |
69 |
cccagtgatcattcacaaaatcaattagatccttctcttaaagacaaagct |
119 |
Q |
| |
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|||| ||||| | |||| |||||||| |||||||||||||||||||||||| |
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|
| T |
30447109 |
cccaatgatcttgcacacaatcaattggatccttctcttaaagacaaagct |
30447059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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