View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_high_80 (Length: 293)
Name: NF16554_high_80
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_80 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 32062484 - 32062760
Alignment:
| Q |
1 |
aatagtattaggtgtatgttttgcttgagggttgttcttgtagttgatggtatatgtataatatgtgagatatgtttttggttaaagcacaggtttgcag |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32062484 |
aatagtatgaggtgtatgttttgcttgagggttgttcttgtagttgatggtatatgtataatatgtgagatatgtttttggttaaagcactggtttgcag |
32062583 |
T |
|
| Q |
101 |
atcaaatgtggtttgaattccacatatttacaaattaaattcttatcgt---ataacctagtaacttttcgttagataaatacgtttatgatttaaactc |
197 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062584 |
atcacatgtggtttgaattccacatatttacaaattaaattcttatcgtataataacctagtaacttttcgttagataaatacgtttatgatttaaactc |
32062683 |
T |
|
| Q |
198 |
cgaaggtagatatatgtgatatatatattagttaaattaattaagtgaaaagatctagttactttaaatatgcatca |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062684 |
cgaaggtagatatatgtgatatatatattagttaaattaattaagtgaaaagatctagttactttaaatatgcatca |
32062760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 32068791 - 32068952
Alignment:
| Q |
60 |
aatatgtgagatatgtttttggttaaag---cacaggtttgcagatcaaatgtggtttgaattccacatatttacaaattaaattcttatcgtataacct |
156 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
32068791 |
aatatgtgagatatgtttttggtaaaaaaaacactagtttgcagatcgcatgtggtttgaattccacatatttacaaatt-aattattatcatataaccc |
32068889 |
T |
|
| Q |
157 |
agtaacttttcgttagataaatacgtttatgatttaaactccgaaggtagatatatgtgatatata |
222 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| | |||||||||||||||||| |||||| |
|
|
| T |
32068890 |
agtaacttttcgttagataaa---attttagatttaaaattcgaaggtagatatatgtggtatata |
32068952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 32069287 - 32069325
Alignment:
| Q |
236 |
aattaagtgaaaagatctagttactttaaatatgcatca |
274 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
32069287 |
aattaagtaaagagatctagttactttaaatatgcatca |
32069325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University