View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_high_86 (Length: 276)

Name: NF16554_high_86
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_high_86
NF16554_high_86
[»] chr2 (5 HSPs)
chr2 (1-139)||(13016919-13017057)
chr2 (137-261)||(13015990-13016118)
chr2 (1-227)||(11272412-11272637)
chr2 (3-218)||(1479434-1479647)
chr2 (1-69)||(30995321-30995389)
[»] chr6 (4 HSPs)
chr6 (1-214)||(1034180-1034394)
chr6 (1-179)||(2920962-2921140)
chr6 (89-179)||(18246572-18246662)
chr6 (151-218)||(32548941-32549008)
[»] chr8 (7 HSPs)
chr8 (1-188)||(8273717-8273904)
chr8 (3-227)||(9936279-9936506)
chr8 (5-205)||(37269843-37270042)
chr8 (5-205)||(42941125-42941325)
chr8 (103-205)||(36404064-36404166)
chr8 (1-189)||(30503004-30503192)
chr8 (3-62)||(37484904-37484963)
[»] chr1 (2 HSPs)
chr1 (23-208)||(32774124-32774309)
chr1 (1-62)||(19586677-19586738)
[»] chr7 (2 HSPs)
chr7 (3-213)||(42460093-42460303)
chr7 (89-179)||(31234771-31234861)
[»] chr5 (1 HSPs)
chr5 (1-188)||(36988910-36989097)
[»] chr3 (4 HSPs)
chr3 (127-227)||(53553627-53553728)
chr3 (89-179)||(1259319-1259409)
chr3 (89-179)||(37242607-37242697)
chr3 (1-62)||(51042162-51042223)
[»] chr4 (7 HSPs)
chr4 (3-205)||(2282126-2282328)
chr4 (89-179)||(16989575-16989665)
chr4 (5-65)||(4913493-4913553)
chr4 (5-65)||(43441460-43441520)
chr4 (127-188)||(4913370-4913431)
chr4 (5-65)||(22904704-22904764)
chr4 (5-65)||(22956372-22956432)
[»] scaffold0760 (1 HSPs)
scaffold0760 (112-205)||(1722-1815)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 13017057 - 13016919
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgaga 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13017057 tggttgatttggcatgcgacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgaga 13016958  T
Q  101 taaaagcggtttcttgggtttggacgttgagtagattaa 139  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  13016957 taaaagtggtttcttgggtttggacgttgagtagattaa 13016919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 137 - 261
Target Start/End: Complemental strand, 13016118 - 13015990
Alignment:
Q  137 taaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgtttttggatctgc----ttaagg 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||    
T  13016118 taaagataacctcttttctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaatggtgctgtttttggatctgcttaattaagg 13016019  T
Q  233 ggtttgtgttgatctcgggcccctctgtg 261  Q
    |||||||||||||||||||||||||||||    
T  13016018 ggtttgtgttgatctcgggcccctctgtg 13015990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11272412 - 11272637
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa-caaagtgaaggaagtagaggaactagtggatgag 99  Q
    |||||||||||||||||||||||||||| |||||| | | |||||||||| |||||||| || || |||||  |||||||| |||||| | ||| ||||     
T  11272412 tggttgatttggcatgcaacaatttggttgatttgaaag-aaagaaatgcaaggattttcaataatcaaaga-aaggaagtggaggaaattgtgaatgaa 11272509  T
Q  100 ataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaa 199  Q
    || |||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||| |||||||| ||||||| ||| |||||||||   |||||||    
T  11272510 atcaaagcggtttcttgggtttggacgttgagtaggttaaagatagcttctttcctcttctatgagtgaacttggattcctagagagtgcccaaatagaa 11272609  T
Q  200 gatgaatggtgctgtttttggatctgct 227  Q
    |||||| |  ||||||||||||||||||    
T  11272610 gatgaacgacgctgtttttggatctgct 11272637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 1479647 - 1479434
Alignment:
Q  3 gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagata 102  Q
    ||||||||||  ||| || ||||||| || ||||| |||||||||||| |||||||| |  ||||||| |||||| || || ||  |||| || |||||     
T  1479647 gttgatttggtgtgccaccatttggttgacttggaaggaaagaaatgcaaggattttcaccaacaaagagaaggaggtggaagaggtagttgacgagatc 1479548  T
Q  103 aaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagat 202  Q
    ||||||||||| |||| ||||||| ||||||||||||||||| | || || ||||||||||||||||||||||||||   ||||||| | |||| |||||    
T  1479547 aaagcggtttcgtgggattggacgctgagtagattaaagatagcatcgttcctcttttatgagtggacttggaatcc--tagagtgcctaaataaaagat 1479450  T
Q  203 gaatggtgctgttttt 218  Q
    |||  |||||||||||    
T  1479449 gaaatgtgctgttttt 1479434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30995321 - 30995389
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaa 69  Q
    |||||||||||||| ||| | ||||||  |||||||| ||| || |||||| |||||||||| ||||||    
T  30995321 tggttgatttggcacgcatctatttggatgatttggaaggagaggaatgctcggatttttaaaaacaaa 30995389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 1034180 - 1034394
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgaga 100  Q
    |||||||||||||| || |||||||||| |||||||| |||||||||||| ||||||||||| ||||||| |||||| || |  ||  ||||||||||||    
T  1034180 tggttgatttggcacgcgacaatttggttgatttggaaggaaagaaatgcaaggatttttaataacaaagcgaaggaggttggtgagatagtggatgaga 1034279  T
Q  101 taaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaata-gaa 199  Q
    | |||||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||||||||||| | ||||||| | |||| | |    
T  1034280 ttaaagcggtttcttgggtttggacgttgagtagattaaagatagcatcgttcctcttttatgagtggacttggaatcctaaagagtgcctaaataggga 1034379  T
Q  200 gatgaatggtgctgt 214  Q
    |||||| ||||||||    
T  1034380 gatgaaaggtgctgt 1034394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 2921140 - 2920962
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgaga 100  Q
    ||||||||||||||  | || |||||||||||||||| ||||||||| || ||||| || || ||| ||  |||||| || |||||| | ||||| || |    
T  2921140 tggttgatttggcacactactatttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggacgata 2921041  T
Q  101 taaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 179  Q
    | |||||  ||||||||||||||| ||||||||| ||||||||| | ||||| ||||||||||||||||| ||||||||    
T  2921040 ttaaagcactttcttgggtttggatgttgagtaggttaaagatagcttctttcctcttttatgagtggacatggaatcc 2920962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 18246662 - 18246572
Alignment:
Q  89 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 179  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  18246662 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 18246572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 32548941 - 32549008
Alignment:
Q  151 tttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgttttt 218  Q
    |||||||||||| ||||||||| |||||| ||| | ||  | ||||||||||||| ||||||||||||    
T  32548941 tttctcttttataagtggacttagaatcctagataatgtctaaatagaagatgaagggtgctgttttt 32549008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 8273717 - 8273904
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgaga 100  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||  || |||| ||||| |||||  ||||||||||||    
T  8273717 tggttgatttggcatgcgacaatttggtcgatttggaaggaaagaaatgcaaggatttttaacaatcaaatgaaagaagtggaggagttagtggatgaga 8273816  T
Q  101 taaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtg 188  Q
    | || |||||||||||||||||||||  |||||||||||||||| | ||||| |||||||||||||||| ||||||||| ||||||||    
T  8273817 ttaaggcggtttcttgggtttggacgacgagtagattaaagatagcttctttcctcttttatgagtggatttggaatcctagagagtg 8273904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 9936279 - 9936506
Alignment:
Q  3 gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagata 102  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||||  ||||||| ||  |||||| |||||| || | |||  |||||||||||||     
T  9936279 gttgatttggcatgccactatttggttgatttggatggaaagaaatgcacggattttcaatcacaaagagaaggatgttggggagttagtggatgagatt 9936378  T
Q  103 aaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagat 202  Q
     ||||||| |||||||| |||| |||||| ||| |||||||| | || || ||||||||||||||||||||||| || ||| ||||| | ||||||||||    
T  9936379 gaagcggtgtcttgggtgtggatgttgagcagactaaagatagcatcgttcctcttttatgagtggacttggaaccctagacagtgcctaaatagaagat 9936478  T
Q  203 gaatggtgctg---tttttggatctgct 227  Q
    ||| |||||||   ||||||||||||||    
T  9936479 gaaaggtgctggcttttttggatctgct 9936506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 37270042 - 37269843
Alignment:
Q  5 tgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaa 104  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||  ||| |||||| || || ||  | ||||| || || ||    
T  37270042 tgatttggcatgcaacaatttggacgatttggaaggaa-gaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggaggaaatcaa 37269944  T
Q  105 agcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatga 204  Q
    ||   | |||||| |||||  |||||||||| | |||||| | || || |||||||||||||||||||||||||| ||||| ||  ||||||||||||||    
T  37269943 agttatatcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatga 37269844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 42941125 - 42941325
Alignment:
Q  5 tgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaa 104  Q
    ||||||| ||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||  ||| |||||| || || ||  | ||||| || || ||    
T  42941125 tgatttgacatgcaacaatttggacgatttggaaggaaaaaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggaggaaatcaa 42941224  T
Q  105 agcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatga 204  Q
    ||   | |||||| || ||  |||||||||| |||||||| | || || |||||||||||||||||||||||||| ||||| ||   |||||||||||||    
T  42941225 agttttatcttggtttggggtgttgagtagactaaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcgtaatagaagatga 42941324  T
Q  205 a 205  Q
    |    
T  42941325 a 42941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 36404166 - 36404064
Alignment:
Q  103 aaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagat 202  Q
    |||| ||| |||||| ||||| ||||||||||| | |||||| | || || ||||| || ||||||||||||||||| ||||| || || ||||||||||    
T  36404166 aaagtggtatcttggttttgggcgttgagtagacttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaatagaagat 36404067  T
Q  203 gaa 205  Q
    |||    
T  36404066 gaa 36404064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 30503192 - 30503004
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgaga 100  Q
    ||||||||||| |||||||| ||||||  |||||||| |||||| ||||| ||||| ||||||||| || | ||  |  | || ||  ||||||| || |    
T  30503192 tggttgatttgacatgcaactatttggatgatttggaaggaaaggaatgcgaggatctttaagaaccaattcaaaaacttcgatgagatagtggaagaca 30503093  T
Q  101 taaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgc 189  Q
    | ||||||   ||||||  |||| ||||||||||||| | |||| | ||||  ||||| || ||||||  |||||||||||||||||||    
T  30503092 ttaaagcgacatcttggtgttggtcgttgagtagattgaggatagcttcttacctcttctacgagtggtgttggaatccgagagagtgc 30503004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 37484963 - 37484904
Alignment:
Q  3 gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 62  Q
    ||||||||||||||   | |||||||| ||||||| |||||| |||||||||||||||||    
T  37484963 gttgatttggcatgtggcgatttggtcaatttggaaggaaaggaatgctaggatttttaa 37484904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 32774309 - 32774124
Alignment:
Q  23 tttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttg 122  Q
    |||||| |||||||| |||||||||||| ||||| || || ||| ||  |||||| || |||||  ||||||||||||| ||||||||||||||||||||    
T  32774309 tttggttgatttggaaggaaagaaatgcaaggatcttcaacaaccaaacgaaggaggttgaggatttagtggatgagatcaaagcggtttcttgggtttg 32774210  T
Q  123 gacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatgg 208  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  32774209 gacgttgagtagattaaagatagcctcattcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaatgg 32774124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19586738 - 19586677
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 62  Q
    |||||| ||||||| ||||| ||||||| |||||||| |||||||||||| ||||| |||||    
T  19586738 tggttggtttggcacgcaacgatttggttgatttggaaggaaagaaatgcaaggatctttaa 19586677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 42460303 - 42460093
Alignment:
Q  3 gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagata 102  Q
    ||||||||||||||| || ||||||| |||||||| ||||||||||||  ||||||| ||  | |||| |||||| || | |||  |||||||||||||     
T  42460303 gttgatttggcatgccactatttggttgatttggaaggaaagaaatgcccggattttcaatcaaaaagagaaggatgttggggagttagtggatgagatt 42460204  T
Q  103 aaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagat 202  Q
    |||||||| |||||||| ||||   |||| ||  |||||||| | || || ||||||||||||| |||||||||||| ||||||||| | ||||||||||    
T  42460203 aaagcggtgtcttgggtgtggatactgagcaggctaaagatagcatcgttcctcttttatgagtagacttggaatcctagagagtgcctaaatagaagat 42460104  T
Q  203 gaatggtgctg 213  Q
    ||| |||||||    
T  42460103 gaaaggtgctg 42460093  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 31234861 - 31234771
Alignment:
Q  89 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 179  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||||||||||||    
T  31234861 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacttggaatcc 31234771  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 36988910 - 36989097
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa-caaagtgaaggaagtagaggaactagtggatgag 99  Q
    ||||||||||||||||| || ||||||| |||||||| |||||||||||| ||||||||||| || | ||| |||| | || |||||| ||||| | ||     
T  36988910 tggttgatttggcatgctactatttggttgatttggaaggaaagaaatgcgaggatttttaataatctaag-gaagaatgtggaggaaatagtgaacgaa 36989008  T
Q  100 ataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtg 188  Q
    || |||||||||||||||||||||  ||||||||| || |||||| | ||||| ||||| ||| ||||||| |||||||| ||||||||    
T  36989009 atcaaagcggtttcttgggtttggttgttgagtaggttgaagatagcttctttcctcttctataagtggacgtggaatcctagagagtg 36989097  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 53553728 - 53553627
Alignment:
Q  127 ttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctg-tttttggatctg 225  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||| | ||||| ||||||| || |||| ||||||||||||    
T  53553728 ttgagtagattaaagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatctg 53553629  T
Q  226 ct 227  Q
    ||    
T  53553628 ct 53553627  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 1259409 - 1259319
Alignment:
Q  89 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 179  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  1259409 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 1259319  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 37242697 - 37242607
Alignment:
Q  89 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 179  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  37242697 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 37242607  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51042162 - 51042223
Alignment:
Q  1 tggttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaa 62  Q
    |||||||||||||| ||| ||||||||  |||||||| |||||||||||| ||||| |||||    
T  51042162 tggttgatttggcacgcatcaatttggatgatttggaaggaaagaaatgcaaggatctttaa 51042223  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 2282126 - 2282328
Alignment:
Q  3 gttgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagata 102  Q
    ||||||||||||||  ||||||||||  |||||||  ||||| ||||  |||||||| || || ||||||||||  || ||  |  |||||||||||||     
T  2282126 gttgatttggcatgtcacaatttggttaatttggaaagaaagcaatgaaaggattttcaacaataaagtgaagggtgttgataatttagtggatgagatt 2282225  T
Q  103 aaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagat 202  Q
    ||||||||||||||||| ||| | |||||||||||||||| | | || || ||||| ||||| ||||||| ||| || || || ||| | ||||||||||    
T  2282226 aaagcggtttcttgggtgtggtcattgagtagattaaagaaagcatcgttcctcttctatgaatggacttagaaccctagggaatgcctaaatagaagat 2282325  T
Q  203 gaa 205  Q
    |||    
T  2282326 gaa 2282328  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 16989575 - 16989665
Alignment:
Q  89 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 179  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  16989575 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 16989665  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 4913553 - 4913493
Alignment:
Q  5 tgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 65  Q
    |||||||||||||  ||||||||  |||||||| |||||||||||| ||||||||||||||    
T  4913553 tgatttggcatgcctcaatttggatgatttggaaggaaagaaatgcgaggatttttaagaa 4913493  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 43441520 - 43441460
Alignment:
Q  5 tgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 65  Q
    |||||||||||||  ||||||||  |||||||| ||||||||| || ||||||||||||||    
T  43441520 tgatttggcatgcctcaatttggatgatttggaaggaaagaaacgcgaggatttttaagaa 43441460  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 4913431 - 4913370
Alignment:
Q  127 ttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtg 188  Q
    ||||||||||| | |||| | |||| ||||||||| ||||||  ||||||||||||||||||    
T  4913431 ttgagtagattgaggatagcttcttgtctcttttacgagtggtgttggaatccgagagagtg 4913370  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 22904764 - 22904704
Alignment:
Q  5 tgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 65  Q
    ||||||| |||||  | ||||||  |||||||||||||||||| || ||||||||||||||    
T  22904764 tgatttgacatgcctctatttggatgatttggatggaaagaaacgcgaggatttttaagaa 22904704  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 22956432 - 22956372
Alignment:
Q  5 tgatttggcatgcaacaatttggtcgatttggatggaaagaaatgctaggatttttaagaa 65  Q
    ||||||| |||||  | ||||||  |||||||||||||||||| || ||||||||||||||    
T  22956432 tgatttgacatgcctctatttggatgatttggatggaaagaaacgcgaggatttttaagaa 22956372  T

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Target: scaffold0760 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 1815 - 1722
Alignment:
Q  112 tcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaa 205  Q
    |||||| |||||  |||||||||| | |||||| | || || |||||||||||||||||||||||||| ||||| ||  |||||||||||||||    
T  1815 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 1722  T

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