View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_high_88 (Length: 270)
Name: NF16554_high_88
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_88 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 31 - 254
Target Start/End: Original strand, 2252341 - 2252564
Alignment:
| Q |
31 |
tcacatatactgtgtctggctagccagtttatcataaaaacaagttggaacagtttccctaacagaatttagtgcaatcagctttataaattagacgaat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2252341 |
tcacatatactgtgtctggctagccagtttatcataaaaacaagttggaacagtttccctaacagaatttggtgcaatcagctttataaattagacgaat |
2252440 |
T |
|
| Q |
131 |
attgcaagtacggtatttctataaatgaacaacataaataacaaagataaggactgattttctatcaactatcttctggagataatgatataaccagaaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252441 |
attgcaagtacggtatttctataaatgaacaacataaataacaaagataaggactgatttcctatcaactatcttctggagataatgatataaccagaaa |
2252540 |
T |
|
| Q |
231 |
tttgtactcctagttacaaaaaac |
254 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2252541 |
tttgtactcctagttacaaaaaac |
2252564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 18948467 - 18948404
Alignment:
| Q |
143 |
gtatttctataaatgaacaacataaataac-aaagataaggactgattttctatcaactatctt |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||| |||||| |
|
|
| T |
18948467 |
gtatttctataaatgaacaatataaataacaaaagataaggattgattttttatcaaatatctt |
18948404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University