View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_high_89 (Length: 270)
Name: NF16554_high_89
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_high_89 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27159586 - 27159837
Alignment:
| Q |
1 |
aacatctaagagttttgaagttttagtttcttaagtttcttaacaatgtcttcttctactcttcaatggctaagcttagttggcatcatttggctccaag |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27159586 |
aacatctaagagtttagaagttttagtttctcaagtttcttaacaatgtcttcttctactcttcaatggctaagcttagttggcatcatttggctccaag |
27159685 |
T |
|
| Q |
101 |
ccataaatggaacaaacacaaattttcctgcttactcttcccagctgaaacaacttctttccatttcacaagtagagctcaataaccttgcttttgcatc |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27159686 |
ccataaatggaacaaacacaaatttccctgcttactcttcccagctgaaacaacttctttccatttcacaagtagaactcaataaccttgcttttgcatc |
27159785 |
T |
|
| Q |
201 |
tgatgctggcaaactttttggttggttttctggccttgctgctatttacctt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27159786 |
agatgctggcaaactttttggttggttttctggccttgctgctatttacctt |
27159837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 27144189 - 27144403
Alignment:
| Q |
37 |
ttcttaacaatgtcttcttctactcttcaatggctaagcttagttggcatcatttggctccaagccataaatggaacaaacacaaattttcctgcttact |
136 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||||| |||| || |||||| |
|
|
| T |
27144189 |
ttcttcacaatgccttctttaactcttcaatggctcagcctagttgccatcatttggctccaagccataagtggaacaaacacagatttccccacttact |
27144288 |
T |
|
| Q |
137 |
cttcccagctgaaacaacttctttccatttcacaagtagagctcaataaccttgcttttgcatctgatgctggcaaactttttggttggttttctggcct |
236 |
Q |
| |
|
||||||| || |||||| ||||||||||||| ||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27144289 |
cttcccaactaaaacaaattctttccatttctcaagttcaactcaataaccttgcttttgcatcagatgctggcaagctttttggttggttttctggcct |
27144388 |
T |
|
| Q |
237 |
tgctgctatttacct |
251 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27144389 |
tgctgctatttacct |
27144403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 27260237 - 27260149
Alignment:
| Q |
154 |
cttctttccatttcacaagtagagctcaataaccttgcttttgcatctgatgctggcaaactttttggttggttttctggccttgctgc |
242 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||| | ||||| |||||||||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
27260237 |
cttctttccatttctcaagtgcatttcaataaccatccttttacatctgatgccggaaaactttttcgccggttttctggccttgctgc |
27260149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 27260279 - 27260242
Alignment:
| Q |
79 |
gttggcatcatttggctccaagccataaatggaacaaa |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27260279 |
gttggcatcatttgtctccaagccataaatggaacaaa |
27260242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University