View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_1 (Length: 969)
Name: NF16554_low_1
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 481 - 960
Target Start/End: Complemental strand, 54733543 - 54733064
Alignment:
| Q |
481 |
tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcacacaaattacatacacagattagctag |
580 |
Q |
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| T |
54733543 |
tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcaaacaaattacatacacagattagctag |
54733444 |
T |
|
| Q |
581 |
gaataaatatggtttgtacttcatttattcgtagcttctgttgtcttgcaatgaatgcctccacggtgcgacgaaattcgtcgctgctcattccatcttc |
680 |
Q |
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| T |
54733443 |
gaataaatatggtttgtacttcatttattcgtagcttccgttgtcttgcaatgaatgcctccaccgtgcgacgaaattcgtcgctgctcattccatcttc |
54733344 |
T |
|
| Q |
681 |
gggatataaactccattttttctctttatcaacttcaatgtttttcctcttactcttatcattatcactctcacacctttgcaacactctttgatccttc |
780 |
Q |
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| T |
54733343 |
aggatataaactccattttttctctttatcaacttcaatgtttttcctcttactcttatcattatcactctcacacctttgcaacactctttgatccttc |
54733244 |
T |
|
| Q |
781 |
gcatcatcactattcacacccctcaccaactcaatttccgattgacacctcctatatcccttcacttccaaacccatctctgtttttatctcctgtttct |
880 |
Q |
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| T |
54733243 |
gcatcatcactattcacacccctcaccaactcaatttccgattgacacctcctatatcccttcacttccaaacccatctctgtttttatctcctgtttct |
54733144 |
T |
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| Q |
881 |
cttccaacttcattttgttatcatcttcactctttatactctctttttcagagaatttcaccatgcatccatcgtatatt |
960 |
Q |
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| T |
54733143 |
cttccaacttcattttgttatcatcttcactctttatactctctttttgagagaatttcaccatgcatccatcgtttatt |
54733064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 54734026 - 54733703
Alignment:
| Q |
18 |
gattgagccattt--aactgttgaattgaagctcatcaaagagggaaagttatcataatatctattttctccttgagaatcttgtacaattcctagctaa |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
54734026 |
gattgagccatttttaactgttgaattgaagctcatcaaagagggaaagttatcataatatcttttttctc-ttgagaatcttgtacaattcctagctaa |
54733928 |
T |
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| Q |
116 |
ttaaaagcaaa---------------agctaaaacatcaaatttagacctagagccnnnnnnngaagttaaaataataatgtattttggcttgtgtagca |
200 |
Q |
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| T |
54733927 |
ttaaaagcaaagatataaaaagcaaaagctaaaacatcaaatttagacctagagccaaaaaa--aagttaacataataatgtattttggcttgtgtagca |
54733830 |
T |
|
| Q |
201 |
ccattccaaattccaaataagagtgtgtttagcttctccccattgaggcaacctaactaattattttccatggtgacaagttgttgaaccgcatcacagt |
300 |
Q |
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| T |
54733829 |
ccattccaaattccaaataagagtgtgtttagcttctccccattgaggcaacctaactaattattttccatggtgacaagttgttgaaccgcatcacagt |
54733730 |
T |
|
| Q |
301 |
aagacagacattcaatcttacgtacta |
327 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
54733729 |
aagacagacattaaatcttacgtacta |
54733703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 324 - 455
Target Start/End: Complemental strand, 54733669 - 54733538
Alignment:
| Q |
324 |
actaccataaaaaccaaattggaaaacaccaccatgttttctaactcgaaactcaacaaaattagattaatagactcaaatgtttataatccaaatagtt |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54733669 |
actaccataaaaaccaaattggaaaacaccaccatgttttctaactagaaacccaacaaaattagattaatagactcaaatgtttataatccaaatactt |
54733570 |
T |
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| Q |
424 |
atttactcacttgccctaatctttatttacat |
455 |
Q |
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||| ||||||||||||||||||||||| |||| |
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| T |
54733569 |
attcactcacttgccctaatctttattcacat |
54733538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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