View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_102 (Length: 250)
Name: NF16554_low_102
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_102 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 29621670 - 29621500
Alignment:
| Q |
1 |
catattgctcagctcccccatctgattggtcctccatattttctttctcatcaatgatccttttgttaggaatcactttaacaacctcaagttcaccctg |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29621670 |
catattgctcagctcccctgtctgattggtcctccatattttctttctcatcaatgatccttttgttaggaatcactttaacaacctcaagttcaccctg |
29621571 |
T |
|
| Q |
101 |
caagcattgtaaatttaatacaaaaaacataactgaaagcgactagttgcaaccagctagaatatatcgat |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29621570 |
caagcattgtaaatttaatacaaaaaacataactgaaagcgactagttgcaaccagctagaatatatcgat |
29621500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 29660994 - 29660923
Alignment:
| Q |
61 |
ttttgttaggaatcactttaacaacctcaagttcaccctgcaagcattgtaaatttaatacaaaaaacataa |
132 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
29660994 |
ttttgttaggaatatctttaacaacctcaagttcaccctgcaagcacagtaaatttaatacataaaacataa |
29660923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University