View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_104 (Length: 244)
Name: NF16554_low_104
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_104 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 32526922 - 32527134
Alignment:
| Q |
14 |
aaataaagactttctccaattattcttccttaattacataaaaatatcgttcctcttaaactaactcttaaatgtgttcgtttttaatttcagttaaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32526922 |
aaataaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgttttttatttcagttaaaat |
32527021 |
T |
|
| Q |
114 |
aacnnnnnnnnnttaactccattatacaagtaactcgcccaattgaatttgtatataccatccata-nnnnnnnnagggaatataccatccatatttctt |
212 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32527022 |
aacaaaaaaaatttaactccattatataagtaactcgcccaattgaatttctatataccatccatatttttttttagggaatataccatccatatttctt |
32527121 |
T |
|
| Q |
213 |
ttgattggatatt |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32527122 |
ttgattggatatt |
32527134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 13263869 - 13264092
Alignment:
| Q |
14 |
aaataaagactttctccaattattcttccttaattacataaaaatatcgttcctcttaaactaactcttaaatgtgttcgtttttaatttcagttaaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13263869 |
aaataaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaat |
13263968 |
T |
|
| Q |
114 |
aacnnnnnnnnnttaactccattatacaagtaactcgcccaattgaatttgtatataccatccata-----nnnnnnnnagggaatataccatccatatt |
208 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
13263969 |
aac-aaatttttttaactccattatataagtaactcgcccaattgaatttgtatataccatccatattttttttttttgagggaatataccaaccatatt |
13264067 |
T |
|
| Q |
209 |
tcttttgattggatattgatgatga |
233 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
13264068 |
tcttttgattggatattgatcatga |
13264092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 29255331 - 29255108
Alignment:
| Q |
14 |
aaataaagactttctccaattattcttccttaattacataaaaatatcgttcctcttaaactaactcttaaatgtgttcgtttttaatttcagttaaaat |
113 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29255331 |
aaataaagacattctccaattattctcccttaattaaacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaat |
29255232 |
T |
|
| Q |
114 |
aacnnnnnnnnnttaactccattatacaagtaactcgcccaattgaatttgtatataccatccata-----nnnnnnnnagggaatataccatccatatt |
208 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29255231 |
aac-aaaaaattttaactccattatataagtaactcgcccaattgaatttgtatataccatccatatttttttttttttagggaatataccatccatatt |
29255133 |
T |
|
| Q |
209 |
tcttttgattggatattgatgatga |
233 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
29255132 |
tcttttgattggatattgatcatga |
29255108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 30617531 - 30617750
Alignment:
| Q |
18 |
aaagactttctccaattattcttccttaattacataaaaatatcgttcctcttaaactaactcttaaatgtgttcgtttttaatttcagttaaaataac- |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30617531 |
aaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaataaca |
30617630 |
T |
|
| Q |
117 |
nnnnnnnnnttaactccattatacaagtaactcgcccaattgaatttgtatataccatccata---nnnnnnnnagggaatataccatccatatttcttt |
213 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30617631 |
aatttttttttaactccattatataagtaactcgcccaattgaattggtatataccatccatattttttttttgagggaatataccatccatatttcttt |
30617730 |
T |
|
| Q |
214 |
tgattggatattgatgatga |
233 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
30617731 |
tgattggatattgatcatga |
30617750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 14125658 - 14125605
Alignment:
| Q |
126 |
ttaactccattatacaagtaactcgcccaattgaatttgtatataccatccata |
179 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
14125658 |
ttaactccattatataagtaacttgcccaattgattttgaatataccatccata |
14125605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University