View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_110 (Length: 240)
Name: NF16554_low_110
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_110 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 11895017 - 11895250
Alignment:
| Q |
1 |
ttataatatcatgtgtttgaaacgtaatttaattttgaagagtttaatcaatatgttatgttaatgtacagttattttattttacacatacattcaatga |
100 |
Q |
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| T |
11895017 |
ttataatatcatgtgtttgaaacataatttaattttgaagagtttaatcaatatgttatgttaatgtacagttat-----tttacacatgcattaaatga |
11895111 |
T |
|
| Q |
101 |
tgtgttgtcgtgttgcaacacataactgaatgtgattaaatgtgtttcaaataattttatattgactaaatatactaattaaattctatttcgtcggatg |
200 |
Q |
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| T |
11895112 |
tgtgttgtcgtattgcaacacataattggatgtgattaaatgtgtttcaaataattttatattgactaaatatactaattaaactctatttcgtcggatg |
11895211 |
T |
|
| Q |
201 |
ccttttgatgctcttgctcccacttgaaactatcttcat |
239 |
Q |
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| T |
11895212 |
ccttttgatgctcttgctcccacttgaaactatcttcat |
11895250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 28016585 - 28016617
Alignment:
| Q |
77 |
ttattttacacatacattcaatgatgtgttgtc |
109 |
Q |
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| T |
28016585 |
ttattttacacatacattcaatgatgtgttgtc |
28016617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 28981646 - 28981678
Alignment:
| Q |
77 |
ttattttacacatacattcaatgatgtgttgtc |
109 |
Q |
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| T |
28981646 |
ttattttacacatacatttaatgatgtgttgtc |
28981678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 13056713 - 13056680
Alignment:
| Q |
74 |
attttattttacacatacattcaatgatgtgttg |
107 |
Q |
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| T |
13056713 |
attttattttacacatgcattcaatgatgtgttg |
13056680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 6836365 - 6836329
Alignment:
| Q |
77 |
ttattttacacatacattcaatgatgtgttgtcgtgt |
113 |
Q |
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||||||||| |||| |||||||||||||||||||||| |
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| T |
6836365 |
ttattttacgcatatattcaatgatgtgttgtcgtgt |
6836329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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