View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_low_117 (Length: 228)

Name: NF16554_low_117
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_low_117
NF16554_low_117
[»] chr1 (8 HSPs)
chr1 (20-213)||(48666273-48666466)
chr1 (98-213)||(48628108-48628223)
chr1 (97-213)||(48584524-48584640)
chr1 (109-213)||(48655786-48655890)
chr1 (97-213)||(48660758-48660874)
chr1 (100-213)||(48619037-48619150)
chr1 (99-203)||(11546415-11546519)
chr1 (97-137)||(48627067-48627107)
[»] chr8 (2 HSPs)
chr8 (101-213)||(27227341-27227453)
chr8 (102-149)||(27223151-27223198)
[»] chr3 (1 HSPs)
chr3 (100-204)||(19666402-19666506)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 48666273 - 48666466
Alignment:
Q  20 atttaaccatattattttttgaaacacacataaatgctaacattacataaatataactgcattattaacaacgtttgtgtttcttaatgtcttccataaa 119  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48666273 atttaactctattattttttaaaacacacataaatgctaacattacataaatataactgcattattaacaacgtttgtgtttcttaatgtcttccataaa 48666372  T
Q  120 tgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttcttcaacgtctctgct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48666373 tgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttcttcaacgtctctgct 48666466  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 48628108 - 48628223
Alignment:
Q  98 gtttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcattttt 197  Q
    |||| ||||||||||||||||||||||||||||  |  || ||||| |||||||| |||||||||||||| ||| |||| ||| ||||  ||||||||||    
T  48628108 gttttttaatgtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcattttt 48628207  T
Q  198 cttcaacgtctctgct 213  Q
    |||||||  |||||||    
T  48628208 cttcaactcctctgct 48628223  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 48584524 - 48584640
Alignment:
Q  97 tgtttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttt 196  Q
    |||||||||||||||||||||||  |||||||||  || || ||||| |||||||| ||||  ||||||||||||  ||| ||| ||||| |||||||||    
T  48584524 tgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttgtttgcatttt 48584623  T
Q  197 tcttcaacgtctctgct 213  Q
     ||||||| ||||||||    
T  48584624 gcttcaacttctctgct 48584640  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 48655786 - 48655890
Alignment:
Q  109 tcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttcttcaacgtct 208  Q
    ||||| |||||||||||||||| |||||| ||||| ||||| || || ||||| |||||||| ||||| ||| ||||| |||||||||||||||||  ||    
T  48655786 tcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcct 48655885  T
Q  209 ctgct 213  Q
    |||||    
T  48655886 ctgct 48655890  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 48660758 - 48660874
Alignment:
Q  97 tgtttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttt 196  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||| || ||||  || ||||| || ||| | ||| ||||  |||||||||    
T  48660758 tgtttcttaatgtcttggataaatgcatcaagatgtcggtccgaggaaccaccgactgccatcgcatcctctgctgccgtcttccacttcattgcatttt 48660857  T
Q  197 tcttcaacgtctctgct 213  Q
      |||||| ||||||||    
T  48660858 gtttcaacctctctgct 48660874  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 48619150 - 48619037
Alignment:
Q  100 ttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttct 199  Q
    |||| |||||||||||||||| |||||||||  || || ||||| |||||||  ||||||||||| ||||||  ||| ||| ||||  ||||||||||||    
T  48619150 ttctgaatgtcttccataaattcatcaagattccgatcagaggatccaccaatggccactgcttcatccgccttcttcttccacttcattgcatttttct 48619051  T
Q  200 tcaacgtctctgct 213  Q
    |||||  |||||||    
T  48619050 tcaactcctctgct 48619037  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 11546415 - 11546519
Alignment:
Q  99 tttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttc 198  Q
    ||||||||||||||||| |||| |||||||||  || || ||||| |||||||  |||||||||||||| |||   || ||| ||||  |||||||||||    
T  11546415 tttcttaatgtcttccaaaaattcatcaagattccgatcagaggatccaccaatggccactgcttcctcagcctttttcttccactttattgcatttttc 11546514  T
Q  199 ttcaa 203  Q
    |||||    
T  11546515 ttcaa 11546519  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 48627107 - 48627067
Alignment:
Q  97 tgtttcttaatgtcttccataaatgcatcaagatgtcggtc 137  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  48627107 tgtttcttaatgtcttggataaatgcatcaagatgtcggtc 48627067  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 27227341 - 27227453
Alignment:
Q  101 tcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttctt 200  Q
    ||||||||||||||||||||||||||| ||| || || ||||||||||| ||||| |||||  ||||||| ||||| ||| ||||| |||  |||| |||    
T  27227341 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 27227440  T
Q  201 caacgtctctgct 213  Q
    |||| ||||||||    
T  27227441 caacatctctgct 27227453  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 27223151 - 27223198
Alignment:
Q  102 cttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccacc 149  Q
    ||||||||||||||||||||||||||||||| | || ||||| |||||    
T  27223151 cttaatgtcttccataaatgcatcaagatgttgatcagaggatccacc 27223198  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 19666506 - 19666402
Alignment:
Q  100 ttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttct 199  Q
    ||||||||||||||||||||| |||||||||  || || |||||||||||   |||||| |||||||||||||| || ||| ||||| ||||||||| ||    
T  19666506 ttcttaatgtcttccataaattcatcaagattccgatcagaggaaccaccggtcgccaccgcttcctccgccgctttcttccacttgattgcattttgct 19666407  T
Q  200 tcaac 204  Q
    |||||    
T  19666406 tcaac 19666402  T

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