View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_118 (Length: 228)
Name: NF16554_low_118
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_118 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 30411523 - 30411743
Alignment:
| Q |
7 |
cattttttgtgtgggtggttgttacagtgaaactcaactaagaaaaacagagaattttgacgttgttatgtcaatgttgatggtgaggttcagctccaaa |
106 |
Q |
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| T |
30411523 |
cattttttgtgtgggtggttgttacagtgaaactcaactaagaaaaacagagaattttgacgttgttatgtcaatgttgatggtgaggttcagctccaaa |
30411622 |
T |
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| Q |
107 |
gctccataggagtggagctgaaaccaatgaaactgaaaatttgaagcttattcagcaaatgtaaatctctatttcactccatacaacacacacaacatgg |
206 |
Q |
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| T |
30411623 |
gctccataggagtggagctgaaaccaatgaaactggaaatttgaagcttattctgc-aatgtaaatctctatttcactccatacaacacacacaacatgg |
30411721 |
T |
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| Q |
207 |
cacctcaaaacatacataaata |
228 |
Q |
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| T |
30411722 |
cacctcaaaacatacataaata |
30411743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 30399212 - 30399358
Alignment:
| Q |
9 |
ttttttgtgtgggtggttgttacagtgaaactcaactaagaaaaacagagaattttgacgttgttatgtcaatgttgatggtgaggttcagctccaaagc |
108 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||| ||||| ||| ||| |
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| T |
30399212 |
ttttttgtgtgggtgattgttgcagtgaaactcaactaagaaaaacagagaattttgatgttgttattttatagttgatggtggggttc-gct--ttagc |
30399308 |
T |
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| Q |
109 |
tccataggagtggagctgaaaccaatgaaactgaaaatttgaagcttatt |
158 |
Q |
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|||| || |||||||||||||| |||||||| ||||||||||||||||| |
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| T |
30399309 |
tccagagaagtggagctgaaacgaatgaaacgaaaaatttgaagcttatt |
30399358 |
T |
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