View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_123 (Length: 211)
Name: NF16554_low_123
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_123 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 43993611 - 43993698
Alignment:
| Q |
100 |
ttgaaacattcccatttcgatttgtttgaatttaatcactgcttaatttattcaattaacttaaaatttcggtgatgtaatttgttaa |
187 |
Q |
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| T |
43993611 |
ttgaaacattcccatttcgatttgtttgaatttaaacactgcttaatttattcaattaacttaaaatttcggtgatgtaatttgttaa |
43993698 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 43993503 - 43993547
Alignment:
| Q |
18 |
acagagagcatcttcctccacgttgtcaactcaaaaaagaaatgg |
62 |
Q |
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| T |
43993503 |
acagagagcatcttcctccacgttgtcaactcaaaaaagaaatgg |
43993547 |
T |
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