View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_14 (Length: 594)
Name: NF16554_low_14
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 196 - 579
Target Start/End: Complemental strand, 44361153 - 44360779
Alignment:
| Q |
196 |
attaggccacattaacaccgttataaaagattcactcttgccgcgtatatatttaatttgttacttatatatacatacatatagcttaatttgcagtgtc |
295 |
Q |
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| T |
44361153 |
attaggccacattaacaccgttataaaagattcactcttgccgcgtatatattt-----gttacttatatatacata----tagcttaatttgcagtgtc |
44361063 |
T |
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| Q |
296 |
acataggagtattattaagataactaaagaggtatgacaaattaaattagtggagatggaaaaatgggtgtgtttgatgatgatgttggtagcaatattg |
395 |
Q |
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| T |
44361062 |
aaataggagtattattaagataactaaagaggtgtgacaaattaaattagtggagatggaaaaatgggtgtgtttgatgatgatgttggtagcaatattg |
44360963 |
T |
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| Q |
396 |
gaattaagttttggagtcaaaggtgcagaagaggtaacatatgatggaagatcccttatcatcaatggacaaagaaatattctcttctctggttctattc |
495 |
Q |
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| T |
44360962 |
gaattaagttttggagtcaaaggtgcagaagaggtaacatatgatggaagatctcttatcatcaatggacaaagaaatattctcttctctggttctattc |
44360863 |
T |
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| Q |
496 |
attacccccgtagcacccctcaggtaatcaaatctaattacaatatacctatattcatattattgcatctctcaatagtctctg |
579 |
Q |
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| T |
44360862 |
attacccccgtagcacccctcaggtaatcaaatctacgtacaatatacctatattcatattattgcatctctcaatagtctctg |
44360779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 44361333 - 44361204
Alignment:
| Q |
19 |
tgtaggttgggttttcttgttggcaaagtgtaatcggtgaataagac---accgtaatttggtggcatacacaatgtaaagaaaaactagtcccacccca |
115 |
Q |
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| T |
44361333 |
tgtaggttgggttttcttgttggcaaagtgtaatcggtgaataagacgacaccgtaatttggtggcatacacaatgtaaagaaaaactagtcccacccca |
44361234 |
T |
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| Q |
116 |
aaatattctcatcacccacttcaattgtga |
145 |
Q |
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| T |
44361233 |
aaatattctcatcacccacttcaattgtga |
44361204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 40097571 - 40097615
Alignment:
| Q |
477 |
ctcttctctggttctattcattacccccgtagcacccctcaggta |
521 |
Q |
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| T |
40097571 |
ctcttctctggttcaattcattatcctcgtagcactcctcaggta |
40097615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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