View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_15 (Length: 592)
Name: NF16554_low_15
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 234 - 586
Target Start/End: Original strand, 31459542 - 31459893
Alignment:
| Q |
234 |
gtgacataatgtgacgcatggggtccgtagacaaaacgaatgaaaaagatcattgctctcatcaattcaatgattcacttactaannnnnnnnagggata |
333 |
Q |
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| T |
31459542 |
gtgacaaaatgtgacgcatgggttgcgtagacaaaacgaatgaaaaagatcattgctctcatcaattcaatgattcacttactaattttttt-agagata |
31459640 |
T |
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| Q |
334 |
tacacttttttcacggtgggttgaacaaaatcaagtgggcaccgttattttgttgaaattaatgtttcagttcgttgtaagtttggtcgaccatcgttat |
433 |
Q |
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| T |
31459641 |
tacacttttttcacggtgggttgaacaaaatcaagtgggcaccattattttgttgaaattaatgtttcagttcgttgtaagtttggtcgaccatcgttat |
31459740 |
T |
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| Q |
434 |
tatgtcaaagtttacagtttgaaacttcaattaaaactaggagtcggggtgaatacaatacctatgttcctctcttctgtggcggtgagaaaagctttag |
533 |
Q |
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| T |
31459741 |
catgtcaaagtttacagtttgaaacttcaattaaaactaggagtcggggtgaatacaatacctatgttcctctcttctgtggcggtgagagaagctttag |
31459840 |
T |
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| Q |
534 |
gttaaaggtgacgttgttggtcttttgtgtattaatttgaccgaggtgtctct |
586 |
Q |
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| T |
31459841 |
gttaaaggtgacgttgttggtcttttgtgtattaattcgaccgaggtttctct |
31459893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 59 - 220
Target Start/End: Original strand, 31458530 - 31458691
Alignment:
| Q |
59 |
aaattgatgattatttacggtacttgtgtgattaagttaatgttaaaaatcattagagaggtccaattgaaaggaggaacatttgtttggttaccgtcac |
158 |
Q |
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| T |
31458530 |
aaattgatgattatttacagtacttgtgtgattaagttaatgttaaaaatcattagagaggtccaattgaaaggaggaacacttgtttggttaccgtcac |
31458629 |
T |
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| Q |
159 |
aaaacagtgttatataaatagttaaatggtgtgtattgttttatgcgtgcgcttaaatgatt |
220 |
Q |
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| T |
31458630 |
aaaacagtgttatataaatagttaaatgatgtgtattgttttatgcgtgcgtttaaatgatt |
31458691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 523
Target Start/End: Original strand, 31472246 - 31472299
Alignment:
| Q |
470 |
ctaggagtcggggtgaatacaatacctatgttcctctcttctgtggcggtgaga |
523 |
Q |
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| T |
31472246 |
ctaggagtcggggtgaaaacaattcctacgatcctctcttctgtggtggtgaga |
31472299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 31472093 - 31472128
Alignment:
| Q |
272 |
aatgaaaaagatcattgctctcatcaattcaatgat |
307 |
Q |
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| T |
31472093 |
aatgaaaaagatcattgccctcatcaattcaatgat |
31472128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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