View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_16 (Length: 582)
Name: NF16554_low_16
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 161 - 568
Target Start/End: Original strand, 28671489 - 28671896
Alignment:
| Q |
161 |
tctcaattgagataatagaactgaatgcaattcatattcaagagtagggctggcaatgaaacgagctaactcaatcatagtttagaactcgattcgaaaa |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||||| |
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| T |
28671489 |
tctcaattgagataatagaactgaatgcaattcatattcaagagtagggctggtaatgaaacgagctaactcaaacataggtcagaactcgattcgaaaa |
28671588 |
T |
|
| Q |
261 |
ttagctccgttgagtggcaactaatgttgtcaatgacagattacagaaaataacaacttgttcaaattccaccacgatatagtctgctacagttgttatt |
360 |
Q |
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||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28671589 |
ttagctcagttgagtggcaaccaatgttgtcaatgacatattacagaaaataacaacttattcaaattccaccacgatatagtctgctacagttgttatt |
28671688 |
T |
|
| Q |
361 |
tgacaacactttgtactagcgggttgttccaaacttcactatgcgtagtagcgctatttgacaatacgggcggcaacctaattgtatcgagggagaaagg |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28671689 |
tgacaacactttgtactagcgggttgttccaaacttcactatgcgtagtagcgctatttgacaatacgggcggcaacctaattgtatcgagggagaaagg |
28671788 |
T |
|
| Q |
461 |
gttattaaagaggtagtgtcacgttgataaattgcttagaagatgtttatagaaatgttgtgtttctgaattactagtaaccttcttatatttgtcgtta |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
28671789 |
gttattaaagaggtagtgtcacgttgataaattgcttagaagatgtttatagaaatgttgtgtttctgaattactagtaaccttcttatatttgtagtca |
28671888 |
T |
|
| Q |
561 |
ttttagtt |
568 |
Q |
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|||||||| |
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| T |
28671889 |
ttttagtt |
28671896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 28671287 - 28671446
Alignment:
| Q |
1 |
ttatcttgtacaacagttctatgtcttttaaagatgaaaaatgatgtttttaatgaatgaggttttagaaaaatattcttttaagggaatcacattggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28671287 |
ttatcttgtacaacagttctatgtcttttaaagatgaaaaatgatgtttttaatgaatgaggttttagaaaaatattcttttaagggaatcacattggat |
28671386 |
T |
|
| Q |
101 |
ttattttgctaaagttataggttttgaaaaattatgatgctactacactgattaggaata |
160 |
Q |
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| T |
28671387 |
ttattttgttaaagttataggttttgaaaaatgatgatgctactacattgattaggaata |
28671446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 22075208 - 22075150
Alignment:
| Q |
205 |
tagggctggcaatgaaacgagctaactcaatcatagtttagaactcgattcgaaaatta |
263 |
Q |
| |
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|||||||||||||||| ||| | ||||| || ||||||||||||||||||||| ||||| |
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| T |
22075208 |
tagggctggcaatgaaccgaaccaactcgataatagtttagaactcgattcgacaatta |
22075150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 35672139 - 35672094
Alignment:
| Q |
283 |
aatgttgtcaatgacagattacagaaaataacaacttgttcaaatt |
328 |
Q |
| |
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|||||||||||| ||| |||||||||||||||| ||||||||||| |
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| T |
35672139 |
aatgttgtcaatcgcaggttacagaaaataacaatttgttcaaatt |
35672094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 44596659 - 44596599
Alignment:
| Q |
203 |
agtagggctggcaatgaaacgagctaactcaatcatagtttagaactcgattcgaaaatta |
263 |
Q |
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|||||||||||||||||| ||| | ||||| | ||||||| ||||||||||||| ||||| |
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| T |
44596659 |
agtagggctggcaatgaaccgaaccaactcgacaatagtttggaactcgattcgacaatta |
44596599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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