View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_17 (Length: 570)
Name: NF16554_low_17
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 16 - 562
Target Start/End: Original strand, 34702085 - 34702633
Alignment:
| Q |
16 |
aataatttgataatcgattaatttttgtaaaagaatgaaattcataaaggtgaatgataatgaagtggtaaaaagcatttcaatttggatttctctttgg |
115 |
Q |
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| T |
34702085 |
aataatttgataatcgattaatttttgtaaaagaatgaaaatcataaaggtgaatgataatgaagtggtaaaaagcatttcaatttggatttctctttgg |
34702184 |
T |
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| Q |
116 |
tactattaattcggaggcgtcaacaaattatttccacaagtataagcaagagtttgaagttcaaagtgagaaaccaatgtgatgtgttgtaagataaatt |
215 |
Q |
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| T |
34702185 |
tactattaattcggaggcgtcaacaaattatttccacaagtataagcaagagtttgaagttcaaagtgagaaaccaatgtgatgtgttgtaagataaatt |
34702284 |
T |
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| Q |
216 |
gcttattgccggcaattcttcagacaccctttacgtgaatggtaagtgaagttaacctcagttcaataatcttatcaagcaagtgttaacagctgtttaa |
315 |
Q |
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| T |
34702285 |
gcttattgccggcaattcttcagacaccctttacgtgaatggtaagtgaagttaacctcagttcaataatcttatcaagcaagtgttaacagctgtttaa |
34702384 |
T |
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| Q |
316 |
tttacttttaatttgtggttcacattcatacttaacgtaagaaaacttattaggccggtaatcacaataggtttactttcaattttctttttggttgttt |
415 |
Q |
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| T |
34702385 |
tttacttttaatttgtggttcacattcatacttaacgtaagaaaacttattaggccggtaatcacaataggtttactttcaattttctttttggttgttt |
34702484 |
T |
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| Q |
416 |
ccatttgtctttgactgaactgatccagataaagtgtatataccatgagacaaatatgttaatttacattccatttattaatttttatatcttgatttgt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34702485 |
ccatttgtctttgactgaactgatccagataaagtgtatataccatgagacaaatatgttaatttacattccatttattaatttttatatcttgatttgt |
34702584 |
T |
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| Q |
516 |
tggtttatgtaatctactat--tctcagtttcataatgctatttcttct |
562 |
Q |
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| T |
34702585 |
tggtttatgtaatctactattctctccatttcataatgctatttcttct |
34702633 |
T |
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