View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_18 (Length: 570)
Name: NF16554_low_18
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 7 - 560
Target Start/End: Original strand, 8789457 - 8789997
Alignment:
| Q |
7 |
cacttctcttccgatcaggacatctgttatttccccagatagacttgtcttcaaaaaggtacgtttcattgttccataatcatatacatgcattgatcca |
106 |
Q |
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| T |
8789457 |
cacttctcttccgatcaggacatctgttatttccccagatagacttgtcttcaaaaaggtacgtttcattgttccataatcatatacatgcattgatcca |
8789556 |
T |
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| Q |
107 |
actagacac-gacactgacatcgattataatttaagaaattacaacgtaactataagtatgtgtgccgtgttagtgacggacacctacaccggacacatc |
205 |
Q |
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| T |
8789557 |
accagacactgacactgacatcgattataatttaagaaattacaacgtaactataagtatgtgtgccgtgttagtgacggacacctacaccggacacatc |
8789656 |
T |
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| Q |
206 |
ttcgatctgaagtgtaagtgttgagaatattattatgagtatgatatgaggtgatgtttgtttgtcaggtttcgttgaataatgtttccataagtggaag |
305 |
Q |
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| T |
8789657 |
ttcgatctgaagtgtaagtgttgagaatattat--------------gaggtgatgtttgtttgtcaggtttcgttgaataatgtttccataagtggaag |
8789742 |
T |
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| Q |
306 |
gttaactgtcagagacgaagttgctacagaagcacctgctcctgttaaggttgaaaagatatcaaagaaacaggaagaaggtattgttgtgaacaagttt |
405 |
Q |
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| T |
8789743 |
gttaactgtcagagccgaagttgctacagaagcacctgctcctgttaaggttgaaaagatatcaaagaaacaggaagaaggtattgttgtgaacaagttt |
8789842 |
T |
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| Q |
406 |
aaaccaaagacaccatacattggaaggtgtcttctcaacacaaagatcactggtgatgatgcacctggtgaaacctggctcatggttttcagcactgagg |
505 |
Q |
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| T |
8789843 |
aaaccaaagacaccatacattggaaggtgtcttctcaacacaaagatcactggtgatgatgcacctggtgaaacctggcacatggttttcagcactgagg |
8789942 |
T |
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| Q |
506 |
ttgagtgttctcatgcatttccactctattatttctttttcatttactattcatc |
560 |
Q |
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| T |
8789943 |
gtgagtgttctcatgcatttcctctctattatttcttttacattcactattcatc |
8789997 |
T |
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